Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 4e-14 >seq6 Length=21794218 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 |||||||| || || |||||||| || || |||| || || || || || ||| Sbjct 19646139 GTAGATTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 19646080 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| ||||| || ||||| ||||| || ||||| || || || Sbjct 19646079 GCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 19646020 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||||| || || || |||| || | ||||||||||||| ||| Sbjct 19646019 ACGTTGTCGATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCTTGCCGGTCAGGGTT 19645960 Query 143168 TTTACGAATATTTGCATAGCT 143188 || ||||| || |||||| || Sbjct 19645959 TTGACGAAGATCTGCATACCT 19645939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506998612839120