Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 158 2e-33 >seq6 Length=21794218 Score = 158 bits (174), Expect = 2e-33 Identities = 395/587 (67%), Gaps = 21/587 (4%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| |||||| |||| | | || ||||| | ||||| ||||| ||| || || | Sbjct 906811 TGTTCCCCATCCGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCT 906870 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACT 125114 |||||| || ||||| || || ||| ||| | | | ||||| | | || | | Sbjct 906871 GGACGGCGGAGGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCCC 906930 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||| | | || || || ||| | | |||||||| || | |||||| || ||| Sbjct 906931 CCGAC-GAGAGGCACTTCATCTCCCACGTGCTCGCCTTCTTCGCGGCCTCCGACGGCATC 906989 Query 125175 GTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 || ||| || || | | | ||| | || || || | | |||| || | Sbjct 906990 GTGCTCGAGAACCTCGCGTCCAGGTTCATGTCC-GACGTGCAGGTCGCCGAGGCA-CGCG 907047 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || ||||| ||||| ||| || |||||| | |||||||| |||||||| ||| Sbjct 907048 CCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGC 907107 Query 125293 TTGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAACGCAATCGAC 125348 | || | ||||| ||||| | |||| || || ||||| ||| |||||| Sbjct 907108 TCGAGACCTACATCCGCGA----CGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAC 907163 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || || || | | || ||||| | |||| || || |||||||| | || | || Sbjct 907164 ACCGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGCGGCGAG 907223 Query 125409 T-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 ||||| |||| | || || || |||||| ||| ||||| |||||||| ||||| Sbjct 907224 CGCTTCG----CCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGG 907279 Query 125468 -TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526 | || |||| ||||||| ||||||||||||||||| |||||||| || || || | Sbjct 907280 CTCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCT 907338 Query 125527 GTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||| | || || || ||||||||||| ||||| ||||| ||| Sbjct 907339 CCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCC 907385 Score = 158 bits (174), Expect = 2e-33 Identities = 395/587 (67%), Gaps = 21/587 (4%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| |||||| |||| | | || ||||| | ||||| ||||| ||| || || | Sbjct 6279384 TGTTCCCCATCCGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCT 6279325 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACT 125114 |||||| ||| |||||||| || ||| ||| | | | ||||| | | || | | Sbjct 6279324 GGACGGCCGAGGAGGTCGACCTCTCCTCCGACGCGCGCCACTGGGACGCCGCGCTGTCCC 6279265 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||||| | || || || ||| | |||||||||| || | || || || ||| Sbjct 6279264 CCGAC-GAGCGCCACTTCATCTCCCACGTGCTGGCCTTCTTCGCGGCGTCGGACGGCATC 6279206 Query 125175 GTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 || ||| || || | | | ||| | || || || | | |||| || | Sbjct 6279205 GTGCTCGAGAACCTCGCGTCCAGGTTCATGTCC-GACGTGCAGGTCGCCGAGGCA-CGCG 6279148 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || ||||| ||||| ||| || |||||| | |||||||| |||||||| ||| Sbjct 6279147 CCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGC 6279088 Query 125293 TTGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAACGCAATCGAC 125348 | || | ||||| ||||| | |||| || || ||||| ||| || ||| Sbjct 6279087 TCGAGACCTACATCCGCGA----CGACGTCGAGAAGGACCGCCTCTTCCGCGCCATAGAC 6279032 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || || || | | || ||||| | |||| || || |||||||| | || | || Sbjct 6279031 ACCGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGCGGCGAG 6278972 Query 125409 T-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 ||||| |||| | || || || |||||| || |||||||||||||| ||||| Sbjct 6278971 CGCTTCG----CCGAGCGCCTCGTTGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCGGG 6278916 Query 125468 -TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526 | || |||| ||||||| ||||| ||||||||||| || ||||| || || ||| | Sbjct 6278915 CTCCTTCTGCG-CCATCTTCTGGCTAAAGAAGCGCGGCCTAATGCCGGGCCTCACGTTCT 6278857 Query 125527 GTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||| | || || || ||||||||||| ||||| ||||| ||| Sbjct 6278856 CCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCC 6278810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741036125269160