Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5 116 9e-21 seq4 113 1e-19 >seq5 Length=20131956 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||||||||| ||||| | || || | || || || || || || || Sbjct 16284659 GTGGACTCCTTCTGAATATTGTAGTCGGCAAGGGTGCGGCCATCGTCCAGCTGCTTGCCG 16284600 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || |||| ||| || |||||||| || ||||| || ||||| ||||| || || Sbjct 16284599 GCGAAGATCAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTC 16284540 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| ||| || | || ||||| || ||||| ||||| || || || || Sbjct 16284539 ACGTTGTCGATGGTGTCG-GAGCTCTCAACCTCCAGAGTAATGGTCTTGCCTGTGAGAGT 16284481 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 16284480 CTTGACAAAGATCTGCAT 16284463 Score = 113 bits (124), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || ||||| || | ||||| || ||||| || || ||||||| || || | || || Sbjct 16284446 AGCACTAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCC 16284387 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || || ||||| ||||| || || || || || || ||| Sbjct 16284386 TCCAGCTGCTTGCCAGCGAAGATGAGTCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 16284327 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGT 104526 || |||||||| || || || || | ||| || || | || ||||| || |||||||| Sbjct 16284326 TGGATCTTTGCCTTCACGTTGTCGATGGTGTCTG-AGCTCTCAACCTCGAGGGTAATAGT 16284268 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| || || || || || || || || |||||| Sbjct 16284267 CTTGCCGGTGAGAGTCTTGACGAAAATTTGCATT 16284234 >seq4 Length=21479432 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || || || ||||| ||||| || |||||||| | || || | || || Sbjct 18578394 AGGACAAGGTGCAAGGTGGATTCCTTCTGGATGTTATAGTCTGCAAGTGTACGCCCATCC 18578335 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || || | ||| || || ||||| ||||| || || ||| Sbjct 18578334 TCAAGCTGCTTGCCGGCGAATATAAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCC 18578275 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || ||||| || | |||||| | || ||||| | || || ||| Sbjct 18578274 TGGATCTTAGCCTTCACATTGTCAATCGTATCGGAGGACTCGACCTCCAAGGTGATGGTC 18578215 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || ||||||||||| Sbjct 18578214 TTGCCAGTGAGGGTCTTAACGAATATCTGCAT 18578183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151361652040628