Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq3 127 2e-24 >seq3 Length=29620734 Score = 127 bits (140), Expect = 2e-24 Identities = 170/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| ||||| || || | || || | || |||| ||| | ||||||| Sbjct 21089991 ACGCCGGTGGATCCGAACCCTCCCTCTCCCCTCACGGTGGCGTCGAGGTCCTCCACCTCG 21090050 Query 5561 TCCACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || || || ||| | | | |||| ||||| |||||| || ||||| || | ||| Sbjct 21090051 GCGACCTCCGGCGTCGCGATCAC-CTCGATGATCATCTGCGCGATCCGGTCACCGGGCTT 21090109 Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 ||| |||| ||| || | | ||||||||| | || ||||| ||| |||||||| Sbjct 21090110 CACCGCGAAGTCGGCGTCGGAGTGGTTGAACAGGATGACCCCCACCGGGCCACGGTAGTC 21090169 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 ||||| ||||| ||||||||||||||||| ||||||| | |||||| || || Sbjct 21090170 CGCGTCGATCACTCCCGCGCCCACGTCGATCGAGTGCTTCAGCGCCAGCCCCGA 21090223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430041343951592