Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq2 98.7 8e-16 seq5 87.8 2e-12 >seq6 Length=21794218 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | | ||| | ||| | ||||| ||| |||||| || |||||||| ||||| Sbjct 19645942 ACCTCCCCTGAGCCTCAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 19645883 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || | ||||| |||||||| || || | || | ||||||||| || || Sbjct 19645882 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGG 19645823 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCT----ATGGTATCGGTAGACT 48674 | | ||||||||| || || |||| |||| | |||||||| | |||| Sbjct 19645822 AATGCCCTCCTTGTCCTGGATCTTG-GCTTT---GACGTTGTCAATGGTATCCGAGGACT 19645767 Query 48675 CCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||| | || ||||| || |||||||| || |||||||||||||||||| Sbjct 19645766 CCACCTCAAGGGTGATGGTCTTGCCGGTGAGTGTCTTCACAAAAATCTGCATC 19645714 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || || || ||||| | | | || | ||||| ||||| || ||| | | Sbjct 19269449 CTCCTTCTGGATATTATAATCTGAGAGGAGGCGGCCATCCTCAAGCTGTTTCCCGGCAAA 19269508 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || || ||||||| |||| || | | ||||||||| ||||| ||||| | Sbjct 19269509 GATCAAGCGCTGCTCATCCGGTGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATT 19269568 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || ||||| | ||||| ||| | || |||||||| ||||||||||| ||||| Sbjct 19269569 ATCAATAGTATCTGAGGACTCAACCTCAAGGGTGATGGTTTTCCCGGTGAGAGTCTTCAC 19269628 Query 48715 AAAAATCTGCATC 48727 ||| ||||||||| Sbjct 19269629 AAAGATCTGCATC 19269641 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| ||||| || ||| |||||| || ||||||||||| | ||| || ||| | |||| Sbjct 19646836 CACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCG-CAAGGGTCCGCCCATCCT 19646778 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| ||| | | || | ||||||||| ||| || | || ||||||||| Sbjct 19646777 CAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCT 19646718 Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 || || ||| | | | || || || || | ||||| ||| | || ||||| Sbjct 19646717 GGATCTTGGCCTTCACGTTGTCG--ATCGTGTCCGAGGACTCAACCTCCAAGGTGATGGT 19646660 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || || || ||||| |||||||| Sbjct 19646659 CTTGCCAGTAAGGGTCTTGACAAAGATCTGCAT 19646627 >seq2 Length=27082872 Score = 98.7 bits (108), Expect = 8e-16 Identities = 141/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCG 48592 ||||||||| |||||||| || || || ||| || |||||||||||||||| ||| | Sbjct 2374013 CTCCTTTTGGATGTTGTAGTCCGC-AAGGGTC-CTGCCGTCCTCCAGCTGCTTGCCGGCA 2374070 Query 48593 TAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATA 48652 | || | ||||||||||||| || | | ||||||||| || || ||||| Sbjct 2374071 AAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACG 2374130 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | ||||| || | |||||| ||||| || || || || ||||| || || ||| Sbjct 2374131 TTATCGATGGTGTCAGACGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGTGTCTTC 2374190 Query 48713 ACAAAAATCTGCATC 48727 ||||| ||||||||| Sbjct 2374191 ACAAAGATCTGCATC 2374205 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGCT 48581 ||||| || |||||| || |||||||| ||||||| ||| || | |||||||||| Sbjct 2373774 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGG-GTC-CTGCCATCCTCCAGCT 2373831 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| || || | || | ||||||||||||| || | | ||||||||| || | Sbjct 2373832 GCTTGCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCT 2373891 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||||| | ||||| || | ||||||| ||||| || || || || || | Sbjct 2373892 TGGCCTTGACGTTGTCAATGGTGTCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCAG 2373951 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| || || || |||||||| Sbjct 2373952 TCAGAGTCTTTACGAAGATCTGCAT 2373976 >seq5 Length=20131956 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTC--GCTCGTCCTCCAGCT 48581 || || ||| |||||| ||||||||||| |||||| | ||| || | ||||| |||| Sbjct 16283981 TGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCC-AGGGTCCTGC-CATCCTCGAGCT 16283924 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| || || | || | ||| ||||| || || | | ||||||||| || | Sbjct 16283923 GCTTGCCAGCGAAGATGAGACGTTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCT 16283864 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||||| | ||||| |||| ||||| ||| | |||||||| || || | Sbjct 16283863 TGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAG 16283804 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 |||| || |||||||| ||||||||| Sbjct 16283803 TGAGTGTCTTCACAAAGATCTGCATC 16283778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421238411208491