Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq9 113 2e-20 seq12 111 8e-20 seq1 111 8e-20 seq8 107 1e-18 seq4 107 1e-18 seq10 104 1e-17 seq7 104 1e-17 seq3 102 4e-17 seq5 98.7 5e-16 >seq9 Length=14105664 Score = 113 bits (124), Expect = 2e-20 Identities = 92/109 (84%), Gaps = 5/109 (5%) Strand=Plus/Minus Query 11436 GAATTAATAAAAAA--TCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 |||||| |||||| ||| ||| |||||||| | | |||||||| |||||||||||| Sbjct 10331982 GAATTATAAAAAAAGTTCATATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGT 10331923 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC-GTCGACGATT 11539 ||||||||||||||||| ||||||||||||||| |||| || || |||| Sbjct 10331922 TATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCCAGTTGATGATT 10331874 Score = 107 bits (118), Expect = 1e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 7435324 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 7435383 Query 11512 CAACTGAGCTAATGGGCCGTC 11532 || |||||||||| |||| || Sbjct 7435384 CAGCTGAGCTAATAGGCCTTC 7435404 >seq12 Length=15318893 Score = 111 bits (122), Expect = 8e-20 Identities = 77/87 (89%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| |||| |||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 230274 TAAAAAATAAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 230216 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| |||||||||| |||| Sbjct 230215 CGCTCTAACCAGCTGAGCTAATAGGCC 230189 Score = 104 bits (114), Expect = 1e-17 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 210883 AAAAA--AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 210826 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 210825 CTCTAACCAGCTGAGCTAATAGGCC 210801 >seq1 Length=33916305 Score = 111 bits (122), Expect = 8e-20 Identities = 82/94 (87%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||| ||||||| || ||| ||||||||| | | |||||||| |||||||||||||||| Sbjct 19330596 AATGAATAAAAG-TCTAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATT 19330654 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| ||||||||||||||| |||| Sbjct 19330655 AGCACGACGCTCTAACCAACTGAGCTAATAGGCC 19330688 Score = 111 bits (122), Expect = 8e-20 Identities = 77/87 (89%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||||||| ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 30502380 AAAAAATCAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 30502321 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| |||||||||| |||| Sbjct 30502320 CGCTCTAACCAGCTGAGCTAATAGGCC 30502294 Score = 109 bits (120), Expect = 3e-19 Identities = 80/93 (86%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| | |||| || |||||||||| | | |||||||| ||||||||||||||||| Sbjct 33700481 AATTAAAATAAAA--AATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 33700538 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||| |||||||||| |||| Sbjct 33700539 GCACGACGCTCTAACCAGCTGAGCTAATAGGCC 33700571 >seq8 Length=18224760 Score = 107 bits (118), Expect = 1e-18 Identities = 77/89 (87%), Gaps = 4/89 (4%) Strand=Plus/Minus Query 11445 AAAAATCAAAT----TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 15148953 AAAAATCAAAAATAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 15148894 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 15148893 GACGCTCTAACCAACTGAGCTAATAGGCC 15148865 >seq4 Length=21479432 Score = 107 bits (118), Expect = 1e-18 Identities = 82/96 (85%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||||||| ||||||| ||||||||| | | |||||||| ||||||||||||||| Sbjct 13178605 AGAATTAA-AAAAAATA----TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 13178659 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||| |||| |||||||||| ||||| Sbjct 13178660 TAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCG 13178695 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 11837971 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 11837912 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 11837911 CAGCTGAGCTAATAGGCC 11837894 Score = 100 bits (110), Expect = 1e-16 Identities = 81/98 (83%), Gaps = 3/98 (3%) Strand=Plus/Minus Query 11435 AGAATTAATAAA---AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 |||| |||||| ||| | ||||||||||| | | |||||| | |||||||||||| Sbjct 13734805 AGAAAAAATAAACTTAAAAAACATTGGCCCATGCAGGTCTCGAACATGCGACCTTCGCGT 13734746 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||| |||| |||||||||| |||| Sbjct 13734745 TATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 13734708 >seq10 Length=14643570 Score = 104 bits (114), Expect = 1e-17 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| || ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 10329990 AAAAATAAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 10329933 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 10329932 CTCTAACCAGCTGAGCTAATAGGCC 10329908 >seq7 Length=18603524 Score = 104 bits (114), Expect = 1e-17 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| || ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 15978323 AAAAATAAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 15978266 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 15978265 CTCTAACCAGCTGAGCTAATAGGCC 15978241 >seq3 Length=29620734 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 12986994 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 12987053 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 12987054 CAGCTGAGCTAATAGGCC 12987071 >seq5 Length=20131956 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 15338294 AAACTGGCCGATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 15338353 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 15338354 CAGCTGAGCTAATAGGCC 15338371 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261483261372316