Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5 129 9e-26 seq9 120 5e-23 seq4 118 2e-22 seq3 118 2e-22 seq2 118 2e-22 seq1 105 1e-18 >seq5 Length=20131956 Score = 129 bits (142), Expect = 9e-26 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| | | || Sbjct 14813137 CTCCGCGACAACATCCAGGGGATCACCAAGCCGGCGATCCGGCGCCTGGCGAGGAGGGGC 14813196 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | ||| | ||||||||| Sbjct 14813197 GGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACCCGCGGTGTGCTCAAGATCTTC 14813256 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| || |||||||| || ||||| ||| Sbjct 14813257 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTC 14813316 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 14813317 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 14813357 >seq9 Length=14105664 Score = 120 bits (132), Expect = 5e-23 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| | ||||| | | || Sbjct 8422369 CTCCGCGACAACATCCAGGGGATCACCAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGC 8422428 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || | || || | || | ||||||||| Sbjct 8422429 GGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGCGACCCGCGGAGTGCTCAAGATCTTC 8422488 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||||||| |||| || || || ||| ||||||||||| || ||||| ||| Sbjct 8422489 CTCGAGACCGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 8422548 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 8422549 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 8422589 Score = 111 bits (122), Expect = 2e-20 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| || ||||| | | || Sbjct 13252946 CTCCGCGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGCGGCTGGCGAGGAGGGGC 13252887 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | | | ||||||||| Sbjct 13252886 GGCGTGAAGCGCATCTCCGGGCTGTTCTACGAGGAGACCCGCGGCGCGCTCAAGATCTTC 13252827 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| || |||||||| || ||||| ||| Sbjct 13252826 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTC 13252767 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| ||||||| || | || || || ||||| Sbjct 13252766 ACAGCCATGGACGTCGTCTACGCGCTCAAGCGACAGGGCCG 13252726 >seq4 Length=21479432 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| ||||| || |||||||| || || |||||||| || || Sbjct 16611262 CGCCAAGCGCCACCGCAAGGTGCTTCGCGACAACATCCAGGGCATAACCAAGCCGGCGAT 16611203 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || || ||||| |||| || | |||| || |||| Sbjct 16611202 CCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 16611143 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| || || Sbjct 16611142 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 16611083 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 16611082 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 16611023 Query 16672 CCG 16674 ||| Sbjct 16611022 CCG 16611020 >seq3 Length=29620734 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| ||||| || |||||||| || || |||||||| || || Sbjct 830490 CGCCAAGCGCCACCGCAAGGTGCTTCGCGACAACATCCAGGGCATAACCAAGCCGGCGAT 830549 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || || ||||| |||| || || |||| || |||| Sbjct 830550 CCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGAC 830609 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || || || || Sbjct 830610 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACGTACACGGA 830669 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 830670 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 830729 Query 16672 CCG 16674 ||| Sbjct 830730 CCG 830732 Score = 100 bits (110), Expect = 4e-17 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || || || | | || Sbjct 829630 CTGCGTGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGCCTCGCGAGGAGGGGC 829689 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | || | ||||||||| Sbjct 829690 GGCGTGAAGCGCATCTCCGGCCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 829749 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || || || |||||||| || ||||| ||| Sbjct 829750 CTCGAGAACGTCATCCGCGACGCCGTCACGTACACGGAGCACGCCCGCCGCAAGACCGTC 829809 Query 16634 ACCTCCATGG 16643 ||| |||||| Sbjct 829810 ACCGCCATGG 829819 >seq2 Length=27082872 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| ||||| || |||||||| || || |||||||| || || Sbjct 20528936 CGCCAAGCGCCACCGCAAGGTGCTTCGCGACAACATCCAGGGCATAACCAAGCCGGCGAT 20528877 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || || ||||| |||| || || |||| || |||| Sbjct 20528876 CCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGAC 20528817 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||||||||||| ||| ||| |||| || || || ||| || || Sbjct 20528816 CCGCGGCGTGCTCAAGATCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 20528757 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 20528756 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 20528697 Query 16672 CCG 16674 ||| Sbjct 20528696 CCG 20528694 Score = 86.0 bits (94), Expect = 1e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| ||| || || |||||||| || ||||| ||||| || ||| Sbjct 20529757 GCGAAGCGCCACCGCAAGGTTCTCCGCGACAACATCCAGGGGATCACGAAGCCGGCGATC 20529698 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | ||||| | | || || |||||||| |||| || | |||| || |||| Sbjct 20529697 CGGAGGCTGGCGAGGAGGGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGACC 20529638 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||||||||||| ||| ||| |||| || || || ||| || ||| Sbjct 20529637 CGCGGCGTGCTCAAGATCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGAG 20529578 Query 16613 CACGC 16617 ||||| Sbjct 20529577 CACGC 20529573 >seq1 Length=33916305 Score = 105 bits (116), Expect = 1e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| | ||||| | | || Sbjct 27671832 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGAGGCTGGCCAGGAGGGGC 27671891 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | || | ||||||||| Sbjct 27671892 GGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 27671951 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || || || |||||||| || ||||| ||| Sbjct 27671952 CTGGAGAACGTCATCCGCGACGCCGTCACATACACGGAGCACGCCCGCCGCAAGACCGTC 27672011 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| |||| || || | || || || ||||| Sbjct 27672012 ACCGCCATGGACGTCGTGTACGCCCTCAAGCGCCAGGGCCG 27672052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072922461263