Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq1 132 6e-26 seq8 98.7 1e-15 seq7 82.4 1e-10 >seq1 Length=33916305 Score = 132 bits (146), Expect = 6e-26 Identities = 152/202 (75%), Gaps = 7/202 (3%) Strand=Plus/Minus Query 135643 ATATAATGGTGGTCCTTATCAACTAGTGGTCTTCCACTTC---CTTATCGGTGTCTTCTC 135699 ||| ||||||||||||||| | || | || | |||||| |||| |||| | Sbjct 8033925 ATAGAATGGTGGTCCTTATGAGATAATTGT-TCACACTTCTCACTTA---GTGTAGCTTG 8033870 Query 135700 TTACATGGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGT 135759 ||| |||||||| ||||||||||| || ||| ||||||||||| ||||||||| ||| Sbjct 8033869 TTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 8033810 Query 135760 CGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACA 135819 || || || || | |||||| ||||||||| || ||||| || | ||||| |||| || Sbjct 8033809 TGCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCA 8033750 Query 135820 AGGTTCTTTCAGTGATGGTATG 135841 ||| |||| |||||||||| Sbjct 8033749 AGGAAGTTTCTCTGATGGTATG 8033728 >seq8 Length=18224760 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/188 (71%), Gaps = 13/188 (7%) Strand=Plus/Minus Query 135486 CTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACG 135545 |||| ||||| | |||||||| || || || || |||||| || ||||| || | |||| Sbjct 9460993 CTGCCCCTCCAATAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTACG 9460934 Query 135546 GAAATAACATCATCTCTGGTGCTG---TTATCCCTTCTAGCAACGCCATCGGCCTTCACT 135602 |||| || || ||||||| || || |||| ||| || || ||||| | ||| Sbjct 9460933 GAAACAATATTATCTCTGTTGGTGCCATTATTCCTACTTCTGGGGCGATCGGATTGTACT 9460874 Query 135603 TCTATCCCATCTGGGAAGCTGCTTCTCTT----------GATGAGTGGCTATATAATGGT 135652 | || || || || |||||||| ||| || ||||||||| |||| |||||| Sbjct 9460873 TTTACCCAATTTGAGAAGCTGCATCTGTTTGCATCTGTTGATGAGTGGTTATACAATGGT 9460814 Query 135653 GGTCCTTA 135660 |||||||| Sbjct 9460813 GGTCCTTA 9460806 >seq7 Length=18603524 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 138240 CCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTGATG 138299 || || || ||||| |||||||||| || |||||||| || || ||| |||||||| Sbjct 9543634 CCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTATTCCTGATT 9543693 Query 138300 TATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCC 138334 ||||| |||| |||||| | ||||||||||| || Sbjct 9543694 TATCCACTGGGGCAATCCGGCTGGTTCTTTGCGCC 9543728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627948446646400