Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq8 114 2e-20 >seq8 Length=18224760 Score = 114 bits (126), Expect = 2e-20 Identities = 119/155 (77%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 212398 ATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAG 212457 ||||| ||||||||||| |||||||| |||||||||| || ||| || |||| | Sbjct 4907498 ATGGCTTTCAACCTAAACGGATTCAATTTCAACCAATTTGTAGTTA--GCCAAAGGTCAT 4907441 Query 212458 GTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCAC 212517 ||| | |||||||| |||| | | ||| || || ||||||| |||||| |||||| Sbjct 4907440 GTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTACGGAAGTAATGCAC 4907381 Query 212518 GAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||| | ||||| ||||||||||| || ||| |||| Sbjct 4907380 GAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 4907346 Score = 84.2 bits (92), Expect = 4e-11 Identities = 132/190 (69%), Gaps = 13/190 (7%) Strand=Plus/Minus Query 211684 GCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGT 211743 || ||||| | ||||| || || || ||||| || || || |||| || | || || Sbjct 9460991 GCCCCTCCAATAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTACGGA 9460932 Query 211744 AACAACATCATCTCTG---GTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTC 211800 ||||| || ||||||| |||| || |||| |||| || ||||| || |||| Sbjct 9460931 AACAATATTATCTCTGTTGGTGCCATTATTCCTACTTCTGGGGCGATCGGATTGTACTTT 9460872 Query 211801 TATCCTATCTGGGAAGCAGCAACTCTT----------GATGAGTGGCTCTACAATGGTGG 211850 || || || || ||||| ||| || || ||||||||| | ||||||||||| Sbjct 9460871 TACCCAATTTGAGAAGCTGCATCTGTTTGCATCTGTTGATGAGTGGTTATACAATGGTGG 9460812 Query 211851 TCCTTACCAG 211860 ||||||| || Sbjct 9460811 TCCTTACGAG 9460802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807530054749960