Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq8 109 6e-19 >seq8 Length=18224760 Score = 109 bits (120), Expect = 6e-19 Identities = 126/168 (75%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 171482 GGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT 171541 ||||| ||| ||||| |||||||| ||||||||||| |||||||||| |||||| | Sbjct 4907510 GGTATTAGTAGCATGGCTTTCAACCTAAACGGATTCAATTTCAACCAAT---TTGTAGTT 4907454 Query 171542 -GCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAAT 171600 || || || | || || || |||| ||| | | ||| || || ||||| | Sbjct 4907453 AGCCAAAGGTCATGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTAC 4907394 Query 171601 GGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 171648 |||||| ||||| ||| | ||||| ||||||||||| ||||||||||| Sbjct 4907393 GGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 4907346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570251043255240