Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq5 87.8 2e-12 >seq5 Length=20131956 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || | || || || | |||||| |||| || ||| | Sbjct 16284234 AATGCAAATTTTCGTCAAGACTCTCACCGGCAAGACTATTACCCTCGAGGTTGAGAGCTC 16284293 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | || || |||||| ||||| || ||||| || || ||||| Sbjct 16284294 AGACACCATCGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 16284353 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||||||| || | || |||||||| || || |||| | | | | | || || || Sbjct 16284354 GCAGAGACTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCTGACTACAA 16284413 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || || || ||||| | || ||||| | | ||||| || || Sbjct 16284414 CATCCAGAAGGAGTCTACCCTCCACCTAGTGCTCCGCTTGAGGGGTGG 16284461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429922947546105