Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq182 104 2e-17 seq234 95.1 8e-15 >seq182 Length=15015 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||| ||| ||||||||| | ||||||||||| || | | |||| Sbjct 3452 AAGTCCGTTCCCTTGCCTGCGGTTTCGCTGAAGAGTAGATAGGGACAGTGGAAGTTTCGT 3511 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 3512 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3546 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||| ||||||||| ||||||||||| | Sbjct 5616 CTCTCTTTTCAAAGTTCTTTTCACCTTTCCCTCATGGTACTTGTGCGCTATCGGTCATGT 5675 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 5676 GGTTGTATTTAGCCTTA 5692 >seq234 Length=7173 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| ||||||||| |||||||||||| ||||||||| |||| || ||||||| Sbjct 6852 AAGCATGTTCCCTTGATTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGC 6793 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| || |||||| || |||||||||||||||||| Sbjct 6792 TAACCCATTCATGTGCATCACTAATTAGATGACGA 6758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334937031317021