Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq5 107 2e-18 seq2 96.9 3e-15 >seq6 Length=21794218 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || |||||||| | || || ||||| || Sbjct 19646399 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACACTTGAGGTCGAGTCCTCG 19646458 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| || ||| ||||| || || || || || ||||| Sbjct 19646459 GACACGATTGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 19646518 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || |||| ||||| ||| || ||||| Sbjct 19646519 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACACTGGCTGACTACAAC 19646578 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || |||||||| || || | ||||| ||||| || || || Sbjct 19646579 ATACAGAAGGAATCCACCCTCCACCTGGTGCTCAGGCTCAGGGGTGG 19646625 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | || || ||||| || Sbjct 19646627 ATGCAGATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCTTGGAGGTTGAGTCCTCG 19646686 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || || ||||| || ||||| Sbjct 19646687 GACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 19646746 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || |||| || || | | |||||||| Sbjct 19646747 CAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGGCGGACCCTTGCGGATTACAAC 19646806 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || ||||| ||||| Sbjct 19646807 ATCCAGAAGGAGTCCACCCTCCATTTGGTGCT 19646838 >seq5 Length=20131956 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || |||| || | || || ||| || Sbjct 16284463 ATGCAGATCTTTGTCAAGACTCTCACAGGCAAGACCATTACTCTGGAGGTTGAGAGCTCC 16284522 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| ||||| || || |||||||| Sbjct 16284523 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 16284582 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || || |||||||| || | || |||| ||||| | | ||| |||||| Sbjct 16284583 CAGCGGCTGATCTTCGCCGGCAAGCAGCTGGACGATGGCCGCACCCTTGCCGACTACAAT 16284642 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||||| || || | ||||| Sbjct 16284643 ATTCAGAAGGAGTCCACCCTCCACCTGGTGCT 16284674 Score = 105 bits (116), Expect = 6e-18 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || || ||||||| | || |||||||| || Sbjct 16284007 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATCACCCTTGAGGTGGAGTCCTCC 16284066 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || || || ||| ||| ||| ||||| || || ||||| || |||| Sbjct 16284067 GATACCATTGA--CAATGTTAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCGGACC 16284124 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || |||||||||||||| | || || | | || | | || |||| Sbjct 16284125 AGCAGCGTCTGATCTTTGCCGGCAAACAGCTCGAGGACGGCAGGACCCTAGCTGACTACA 16284184 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || || || || ||||| || || | || || | || || ||||||| Sbjct 16284185 ACATCCAGAAGGAGTCCACCCTTCACCTTGTCCTCCGCCTCAGGGGAGGAA 16284235 >seq2 Length=27082872 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| ||||||| || | ||||| | || |||||||| ||| Sbjct 2373520 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 2373461 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||||||||| || || ||| || ||| ||||| ||||| || || || |||| Sbjct 2373460 GACACTATCGA--CAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCGGACC 2373403 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||| ||||| || | || |||| | || | | || || | Sbjct 2373402 AGCAGCGTCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCAGGACCCTTGCTGACTATA 2373343 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || || ||||| || || | ||||| Sbjct 2373342 ACATCCAGAAGGAGTCCACCCTCCACCTGGTGCT 2373309 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||||| || | ||||| |||| |||||||||||| Sbjct 2374204 ATGCAGATCTTTGTGAAGACACTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCGTCT 2374145 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | || | ||| || ||| ||||| || || || || || || || Sbjct 2374144 GACACCATCGA-TAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCA 2374086 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||||||||| || | || || | | || | | || ||||| Sbjct 2374085 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAGGACGGCAGGACCCTTGCGGACTACAA 2374026 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || ||||| || || || || || Sbjct 2374025 CATCCAAAAGGAGTCAACCCTCCA 2374002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433314844568165