Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq8 141 1e-28 seq1 98.7 1e-15 >seq8 Length=18224760 Score = 141 bits (156), Expect = 1e-28 Identities = 151/197 (77%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 166849 GGTATCTGGTTTACT----GCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTT 166904 |||| ||||| ||| ||| | ||| |||| | |||||| |||||||| ||||| || Sbjct 4907535 GGTACATGGTTCACTATGCGCTTTAGGTATTAGTAGCATGGCTTTCAACCTAAACGGATT 4907476 Query 166905 CAACTTCAACCAGTCCATCATCGATGGTCAG-GGTCGTGTGCTCAACACTTGGGCAGATG 166963 ||| |||||||| | | | | | | || |||| ||| | || |||||||| ||| Sbjct 4907475 CAATTTCAACCAAT---TTGTAGTTAGCCAAAGGTCATGTTATAAATACTTGGGCTGATA 4907419 Query 166964 TCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCC 167023 || |||||| |||| ||| |||| ||||||||||||||| ||||||||||||||||||| Sbjct 4907418 TCATCAACCATGCTAATCTTGGTACGGAAGTAATGCACGAACGTAATGCTCACAACTTCC 4907359 Query 167024 CTCTGGATCTTGCTGCT 167040 |||| || || ||| || Sbjct 4907358 CTCTAGACCTAGCTACT 4907342 Score = 86.0 bits (94), Expect = 7e-12 Identities = 108/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 167714 TTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCG 167773 ||||| ||||| || || || |||| | || || || |||||||||||| ||| Sbjct 15457066 TTTGTTTCTGTATTCCTAATTAATCCACCGGGGCAATCTGGTTGGTTCTTTGTGCCGAGT 15457007 Query 167774 TTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACG 167833 ||||| || ||||| |||||| ||| | | || ||| | || || || || || |||| | Sbjct 15457006 TTTGGAGT-GCAGCAATATTTTGATCCATCCTCTTCTTCCAAGGATTTCACAATTGGAAG 15456948 Query 167834 CTCAACCCTTTCCATATGATGGGAGTT 167860 | || || || ||||||||||||||| Sbjct 15456947 TTAAATCCATTTCATATGATGGGAGTT 15456921 >seq1 Length=33916305 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 166381 TACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTA 166440 || ||||||||||| |||||| || || ||| || |||||||||||||||||| || Sbjct 8033868 TATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 8033809 Query 166441 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 166500 ||||| ||||| | ||||||||| || | | | ||| || | || ||| | |||||| Sbjct 8033808 GCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCAA 8033749 Query 166501 GGTTCTTTCTCTGA 166514 || ||||||||| Sbjct 8033748 GGAAGTTTCTCTGA 8033735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567214337813600