Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq964 109 6e-19 seq3 98.7 1e-15 seq10 95.1 1e-14 seq5 87.8 2e-12 seq2 87.8 2e-12 seq7 86.0 7e-12 seq4 86.0 7e-12 seq11 84.2 2e-11 seq1 84.2 2e-11 >seq964 Length=503 Score = 109 bits (120), Expect = 6e-19 Identities = 76/84 (90%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCG 126323 ||||||||||||||||||||||||||| |||||||||| |||| | ||| || ||| || Sbjct 57 GTCAGGTTGGCCGAGTGGTCTAAGGCGTCAGATTTAAGCTCTGATCCCCGTCTGGGGTCG 116 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 117 TGGGTTCGAACCCCACACCTGACA 140 >seq3 Length=29620734 Score = 98.7 bits (108), Expect = 1e-15 Identities = 80/95 (84%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 27787513 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 27787572 Query 126323 GTGGGTTCGAACCCCACACCTGACA-AATTATTAT 126356 |||||||| || ||||| |||||| ||||||||| Sbjct 27787573 GTGGGTTCAAATCCCACTTCTGACATAATTATTAT 27787607 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 2634146 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 2634205 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 2634206 TGGGTTCAAATCCCACTTCTGACA 2634229 >seq10 Length=14643570 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/96 (82%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 126261 TTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGG 126318 ||| ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || Sbjct 8788862 TTAAAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGA 8788803 Query 126319 GAGCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 | |||||||||| || ||||| ||||||| |||| Sbjct 8788802 GGGCGTGGGTTCAAATCCCACTTCTGACAATATATT 8788767 >seq5 Length=20131956 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 316736 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 316793 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| ||| ||||| Sbjct 316794 GGGTTCAAATCCCACAGCTGTCAATTTATT 316823 >seq2 Length=27082872 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/96 (81%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 26523723 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 26523664 Query 126324 TGGGTTCGAACCCCACACCTGACA--AATTATTATT 126357 ||||||| || ||||| |||||| |||| || || Sbjct 26523663 TGGGTTCAAATCCCACTTCTGACATTAATTTTTTTT 26523628 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 14237251 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 14237194 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 ||| || |||||| ||| ||| || | || |||||| Sbjct 14237193 TTCAAATCCCACAGCTGTCAATTTCATTTTTTAATTTT 14237156 >seq7 Length=18603524 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 4282880 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 4282939 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 4282940 TGGGTTCAAATCCCACTTCTGACA 4282963 >seq4 Length=21479432 Score = 86.0 bits (94), Expect = 7e-12 Identities = 75/91 (82%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 9237024 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 9236967 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTG 126358 ||| || |||||| ||| |||| | |||||| Sbjct 9236966 TTCAAATCCCACAGCTGTCAAAAT-TTATTG 9236937 >seq11 Length=16001410 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/89 (82%), Gaps = 5/89 (6%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC---GGGAGC 126322 |||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | || Sbjct 579834 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGATGAGGGC 579891 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||| || ||||| ||||||| || Sbjct 579892 GTGGGTTCAAATCCCACTTCTGACAATTT 579920 >seq1 Length=33916305 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/102 (79%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 33462023 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 33462080 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||| || |||||| ||| | ||||| | || | ||||| || Sbjct 33462081 TTCAAATCCCACAGCTGTC-AATTACTCTTTTATTTTTTTTT 33462121 Score = 82.4 bits (90), Expect = 9e-11 Identities = 80/102 (78%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 28838523 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 28838466 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||| || |||||| ||| || || || ||| ||||| || Sbjct 28838465 TTCAAATCCCACAGCTGTCACATGGTTTTTGTTTTTTTTTTT 28838424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556843460746840