Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq6 141 2e-28 seq9 95.1 2e-14 seq22 93.3 9e-14 seq12 93.3 9e-14 seq10 93.3 9e-14 seq8 93.3 9e-14 seq5 93.3 9e-14 seq3 93.3 9e-14 seq1 93.3 9e-14 >seq6 Length=21794218 Score = 141 bits (156), Expect = 2e-28 Identities = 400/608 (66%), Gaps = 6/608 (1%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| |||||||| ||||||| ||||| | | Sbjct 6278541 TCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAATGGGTTGGCG 6278600 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||||| ||| ||| || || | || || |||||| || || ||||| | Sbjct 6278601 ACGTTGTACATCTTCTTGCAGCCCAGGGCCATGAGGAGGCGGTCGGCGACGAACTCGATG 6278660 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || || ||||||||| | | |||| ||| || || |||| Sbjct 6278661 TACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGACGGGGAGC-GCGTCGCAGAC 6278719 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| ||| | ||| || | || || || | || || | || | || || Sbjct 6278720 GAACTCCCTCTCGATGTCGACGGCGTCGGCAACGATCTCGCGGACGCGGACCTCGTCGAG 6278779 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 |||| || ||| ||||| | | || | |||||| ||||||||||| Sbjct 6278780 CTTGCCGCGGAGGAGGTCGTAGAGGAGGCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCG 6278839 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 ||||| ||||||||| | ||||| ||||| | || || ||| | |||||||| Sbjct 6278840 GGAGATGAGCTCGTTGGAGAACGTGAGGCCCGGCATTAGGCCGCGCTTCTTTAGCCAGAA 6278899 Query 251922 GATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCG 251981 ||| ||||| ||||| || ||||| | | ||||||||||| | | ||||| ||||| Sbjct 6278900 GATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACACAGGCGAAGGCAACGAGGCG 6278959 Query 251982 CTCAGCAAACGACTTGTCCTGCGACAA--GAACTTCTGTGCCCATGCTGCCTTCTTTCCA 252039 ||| || || || | || || | | | | || ||||| | ||||| | Sbjct 6278960 CTCGGCGAAGCGCTCG-CCGCCGTCGATCCAGCGCATG-GCCCAGTCGGCCTTGCGGCGC 6279017 Query 252040 ACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGATG 252099 || ||||||| || || || || ||||| || | |||| | ||||| |||| Sbjct 6279018 ACGGCGGGGACGGTGTCTATGGCGCGGAAGAGGCGGTCCTTCTCGACGTCGTCGCGGATG 6279077 Query 252100 AGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTAA 252159 | || ||||| || |||||||||||||| |||||| ||| || |||||| | Sbjct 6279078 TAGGTCTCGAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAG 6279137 Query 252160 GCATAGAA 252167 | ||||| Sbjct 6279138 CCGTAGAA 6279145 Score = 138 bits (152), Expect = 2e-27 Identities = 399/608 (66%), Gaps = 6/608 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| |||||||| ||||||| ||||| | | Sbjct 907654 TCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAACGGGTTGGCG 907595 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||||| ||| ||| || || | || | |||||| || || ||||| | Sbjct 907594 ACCTTGTACATCTTCTTGCAGCCGAGCGCCATGAGCAGGCGGTCGGCGACGAACTCGATG 907535 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || || ||||||||| | | |||| ||| || || |||| Sbjct 907534 TACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGACGGGGAGC-GCGTCGCAGAC 907476 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||||||| | ||| || | || || || | || || | || | | | || Sbjct 907475 GAATTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGCGGACGCGGGACTCGTCGAG 907416 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 |||| || ||| ||||| | | || | ||| || ||||||||||| Sbjct 907415 CTTGCCGCGGAGGAGGTCGTATAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCG 907356 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 ||||| ||||||||| | ||||| ||||| | || || ||| |||||||||| Sbjct 907355 GGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAA 907296 Query 251922 GATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCG 251981 ||| ||||| ||||| || ||||| | | |||||||| || | | || || ||||| Sbjct 907295 GATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCAGGCGAAGGCGACGAGGCG 907236 Query 251982 CTCAGCAAACGACTTGTCCTGCGACAA--GAACTTCTGTGCCCATGCTGCCTTCTTTCCA 252039 ||| || || || | || || | | | | || ||||| | ||||| | Sbjct 907235 CTCGGCGAAGCGCTCG-CCGCCGTCGATCCAGCGCATG-GCCCAGTCGGCCTTGCGGCGC 907178 Query 252040 ACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGATG 252099 || ||||||| || ||||| || ||||| || | |||| | ||||| |||| Sbjct 907177 ACGGCGGGGACGGTGTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACGTCGTCGCGGATG 907118 Query 252100 AGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTAA 252159 | || ||||| || |||||||||||||| |||||| ||| || |||||| | Sbjct 907117 TAGGTCTCGAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAG 907058 Query 252160 GCATAGAA 252167 | ||||| Sbjct 907057 CCGTAGAA 907050 >seq9 Length=14105664 Score = 95.1 bits (104), Expect = 2e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 |||| ||||| |||||||||||||||||||| || ||||||| || ||||||||||||| Sbjct 5368792 AGATGGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 5368733 Query 142559 CGAGCCCCAC 142568 |||||||||| Sbjct 5368732 CGAGCCCCAC 5368723 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 6532517 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6532576 Query 142563 CCCCAC 142568 |||||| Sbjct 6532577 CCCCAC 6532582 >seq22 Length=92752 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 25331 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 25272 Query 142563 CCCCAC 142568 |||||| Sbjct 25271 CCCCAC 25266 >seq12 Length=15318893 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 12435433 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 12435492 Query 142563 CCCCAC 142568 |||||| Sbjct 12435493 CCCCAC 12435498 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 12680115 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12680056 Query 142564 CCCAC 142568 ||||| Sbjct 12680055 CCCAC 12680051 >seq10 Length=14643570 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 9686254 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 9686195 Query 142563 CCCCAC 142568 |||||| Sbjct 9686194 CCCCAC 9686189 >seq8 Length=18224760 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 11423454 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 11423513 Query 142563 CCCCAC 142568 |||||| Sbjct 11423514 CCCCAC 11423519 >seq5 Length=20131956 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 17017641 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 17017582 Query 142563 CCCCAC 142568 |||||| Sbjct 17017581 CCCCAC 17017576 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 17338452 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 17338393 Query 142563 CCCCAC 142568 |||||| Sbjct 17338392 CCCCAC 17338387 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 14545372 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14545313 Query 142564 CCCAC 142568 ||||| Sbjct 14545312 CCCAC 14545308 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| |||||||||| ||||||||| || ||||||| || |||||||||||||||| Sbjct 9595248 TAGCCCGTCTAGCTCAGTCCGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 9595189 Query 142562 GCCCCAC 142568 ||||||| Sbjct 9595188 GCCCCAC 9595182 >seq3 Length=29620734 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 14593833 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 14593892 Query 142563 CCCCAC 142568 |||||| Sbjct 14593893 CCCCAC 14593898 >seq1 Length=33916305 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 22905308 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 22905367 Query 142563 CCCCAC 142568 |||||| Sbjct 22905368 CCCCAC 22905373 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 23674453 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 23674512 Query 142563 CCCCAC 142568 |||||| Sbjct 23674513 CCCCAC 23674518 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 32979455 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 32979396 Query 142564 CCCAC 142568 ||||| Sbjct 32979395 CCCAC 32979391 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||| || |||||||||||||||||||| || ||||||| | ||||||||||||||||| Sbjct 27887605 AGCTCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACGTTGTGGTCGTGGGTTCGAG 27887664 Query 142563 CCCCAC 142568 |||||| Sbjct 27887665 CCCCAC 27887670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027803995624931