Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq6 116 3e-21 seq2 100 2e-16 seq5 89.7 4e-13 >seq6 Length=21794218 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| || || |||||||| || || || || ||| ||||| || || ||| Sbjct 19646139 GTAGATTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 19646080 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||||||||| ||||| || ||||| ||||| || Sbjct 19646079 GCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 19646020 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | ||| ||||| || | || | || ||||||||||| ||| Sbjct 19646019 ACGTTGTCGATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCTTGCCGGTCAGGGTT 19645960 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 19645959 TTGACGAAGATCTGCAT 19645943 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || |||| || | || | || || || || || |||||||| || Sbjct 19645944 ATACCTCCCCTGAGCCTCAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCA 19645885 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| ||||| || || |||||| ||||||||||||| ||||| || Sbjct 19645884 GCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGG 19645825 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| ||| | | |||| ||| || | ||| || Sbjct 19645824 GGAATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCAATGGTATCCGAGGACTCC 19645765 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || |||||||| || || || |||||||||||||| Sbjct 19645764 ACCTCAAGGGTGATGGTCTTGCCGGTGAGTGTCTTCACAAAAATCTGCAT 19645715 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || || || || ||| ||||| || || ||| Sbjct 19646367 GTGGATTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 19646308 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||||||||| ||||| || ||||| ||||| || Sbjct 19646307 GCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 19646248 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | ||| ||||| || | || | || || |||||||| || Sbjct 19646247 ACGTTGTCGATCGTGTCTGAGGACTCGACCTCAAGAGTGATGGTCTTTCCGGTCAGGGTC 19646188 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || ||||||||| || Sbjct 19646187 TTGACGAAGATCTGCATGCCT 19646167 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | | || ||||| | || || || || || ||||||||||| Sbjct 19646853 CCACCACGGAGGCGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCA 19646794 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || || ||| ||||| || || || || |||| |||||||| |||||||| ||| Sbjct 19646793 AGGGTCCGCCCATCCTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGA 19646734 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || || ||||| ||||| || | | || | ||||| | ||| || || Sbjct 19646733 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCCGAGGACTCAACC 19646674 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| ||| | || ||||| || || || || ||||| |||||||| Sbjct 19646673 TCCAAGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATCTGCAT 19646627 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || || || || ||| || || || || || Sbjct 19646595 GTGGATTCCTTCTGTATGTTGTAGTCAGCCAGTGTGCGGCCATCCTCGAGCTGCTTGCCG 19646536 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||||||||| |||||||| || || || || ||||| ||||| || Sbjct 19646535 GCAAAGATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTC 19646476 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | ||| ||||| || | || | || ||||| || || || Sbjct 19646475 ACGTTGTCAATCGTGTCCGAGGACTCGACCTCAAGTGTGATGGTCTTGCCAGTAAGGGTC 19646416 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || ||||||||| || Sbjct 19646415 TTGACGAAGATCTGCATGCCT 19646395 >seq2 Length=27082872 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || | || | ||| ||||| || || ||| Sbjct 2373552 GTCGATTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCAAGCTGCTTGCCA 2373611 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| |||||||| ||||||||||| ||||| || ||||| ||||| || Sbjct 2373612 GCAAAGATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTG 2373671 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | ||||| || || | ||| | || ||||| |||||||| Sbjct 2373672 ACGTTGTCAATGGTGTCAGAAGATTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGAGTC 2373731 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 2373732 TTGACGAAGATCTGCATG 2373749 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| | || | || || || || || |||||||| || Sbjct 2373747 ATGCCACCACGGAGGCGGAGAACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCA 2373806 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || | ||| || || || || |||||| ||||||||||||| || ||||| Sbjct 2373807 GCCAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCCGGG 2373866 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||||| || | | |||| |||||| | || || Sbjct 2373867 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGACTCC 2373926 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || ||||| |||||||| ||||| || ||||||||| Sbjct 2373927 ACCTCGAGGGTGATAGTCTTGCCAGTCAGAGTCTTTACGAAGATCTGCATG 2373977 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 ||| || || || || ||||| ||||||||||||| |||||||| || |||||||| || Sbjct 2373365 ATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTT 2373424 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 ||| ||||| || | | || | ||||| | || || || || | ||| | Sbjct 2373425 GTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCAGAAGACTCCACCTCAAGGGTGAT 2373484 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || |||||||||||||| || || || ||||||||| || Sbjct 2373485 AGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATGCCT 2373524 >seq5 Length=20131956 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||| || || || | ||| || || || || ||| Sbjct 16283975 GTGGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTCCTGCCATCCTCGAGCTGCTTGCCA 16283916 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||||||||| || ||||| || || || || || ||||| ||||| || Sbjct 16283915 GCGAAGATGAGACGTTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 16283856 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| ||| || || || | ||| | || ||||| || || || Sbjct 16283855 ACGTTGTCAATGGTGTCGGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGTGTC 16283796 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 16283795 TTCACAAAGATCTGCAT 16283779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420121645113492