Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6 381 1e-100 >seq6 Length=21794218 Score = 381 bits (422), Expect = 1e-100 Identities = 601/848 (71%), Gaps = 31/848 (4%) Strand=Plus/Plus Query 42312 TACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACG 42371 |||||||||||| | || |||||| || |||||| | ||||| || ||| || Sbjct 906846 TACAAGAAGGCGGTGGCGTCGTTCTGGACGGCGGAGGAGGTGGACCTCTCCGCCGACGCG 906905 Query 42372 GCCGGCTGGGAGTCA---CTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCC 42428 | |||||| | ||||| |||| | | ||| || || | || ||| Sbjct 906906 CGCCACTGGGACGCCGCGCTGTCCCCCGACGAGAGGCACTTCATCTCCCACGTGCTCGCC 906965 Query 42429 TTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAG 42488 |||||||| ||||| |||||||| || |||||||| || ||||||||||| || Sbjct 906966 TTCTTCGCGGCCTCCGACGGCATCGTGCTCGAGAACCTCGCGTCCAGGTTCATGTCCGAC 907025 Query 42489 GTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCAC 42548 |||||| | ||||| ||| |||||||||||||||||| ||||| |||||| | ||| Sbjct 907026 GTGCAGGTCGCCGAGGCACGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCAC 907085 Query 42549 TCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGG 42608 || ||| ||||| | |||||| | || ||||||| || ||||||| || | Sbjct 907086 TCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGACGTCGAGAAGGACCGC 907145 Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||| ||||| || || | ||| | | ||||| |||||||| | | Sbjct 907146 CTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGC 907205 Query 42669 TGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGA 42727 |||||||| | ||| ||| |||| |||| | || || ||||| || |||||| Sbjct 907206 TGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGA 907261 Query 42728 GGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGA 42786 ||| ||||||||||||||| ||||| | ||||||||||||||||| || || || | Sbjct 907262 GGGGATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTC-A 907320 Query 42787 TGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACT 42846 |||| || ||||||||||| ||||| |||||| | | |||||||| || || | |||| Sbjct 907321 TGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACT 907380 Query 42847 TTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGGGTCCG 42904 | ||||||||||| | ||| || |||| | |||| ||||| || || ||||| Sbjct 907381 TCGCCTGCCTCCTAT--ACGA-CCTCCTCCGCGGCAAG--CTCGACGAGTCCCGCGTCCG 907435 Query 42905 GGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGT 42964 | ||| || | || ||||| || ||||||| ||| ||| || | |||| ||||| Sbjct 907436 CGAGATCGTCGCCGACGCCGTCGACATCGAGAGGGAATTCGTCTGCGACGCGCTCCCCGT 907495 Query 42965 GTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCA 43024 | || |||||||||||| |||||||||| || |||||||| ||| |||||||||| Sbjct 907496 CGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGAC-- 907553 Query 43025 TCTCCTGTGCCAGATGGGTCTCAGCCGC------CTCTACAA-CACGCCGTGCCCCTTCG 43077 | |||| | |||| ||| || || | ||||| |||| ||| |||| Sbjct 907554 -CGCCTG---CTCATGGCGCTCGGCTGCAAGAAGATGTACAAGGTCGCC-AACCCGTTCG 907608 Query 43078 ACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCG 43137 ||| |||||| |||||| || |||||||||||||||| |||||||||||||||| || Sbjct 907609 ACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCG 907668 Query 43138 ACTACCAG 43145 |||||||| Sbjct 907669 ACTACCAG 907676 Score = 381 bits (422), Expect = 1e-100 Identities = 528/728 (73%), Gaps = 16/728 (2%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 |||||||||||||| || || |||||||| || |||||||| || ||||||||||| Sbjct 6279235 CTGGCCTTCTTCGCGGCGTCGGACGGCATCGTGCTCGAGAACCTCGCGTCCAGGTTCATG 6279176 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || |||||| | ||||| ||| |||||||||||||||||| ||||| |||||| Sbjct 6279175 TCCGACGTGCAGGTCGCCGAGGCACGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAAC 6279116 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | |||||| | || ||||||| || ||||||| Sbjct 6279115 ATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGACGTCGAGAAG 6279056 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || | || ||| ||||| || || | ||| | | ||||| |||||||| Sbjct 6279055 GACCGCCTCTTCCGCGCCATAGACACCGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCC 6278996 Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | ||||||||| | ||| ||| |||| |||| | || || ||||| || Sbjct 6278995 ATGCGCTGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGCCTCGTTGCCTTCGCCTG 6278940 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 |||||||||||||||||||||||| ||||| | ||||||||||||| ||| || | Sbjct 6278939 TGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTAAAGAAGCGCGG 6278880 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 ||||| || ||||| ||||| ||||| |||||| | | |||||||| ||||| | Sbjct 6278879 CCTAATGCCGGGCCTCACGTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTG 6278820 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGG 42899 ||||| ||||||||||| | ||| || |||| | |||| ||||| ||| || Sbjct 6278819 CGACTTCGCCTGCCTCCTCT--ACGA-CCTCCTCCGCGGCAAG--CTCGACGAGGTCCGC 6278765 Query 42900 GTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTG 42959 ||||| | ||| | | || ||||| || ||||||| ||||||| || | |||| Sbjct 6278764 GTCCGCGAGATCGTTGCCGACGCCGTCGACATCGAGAGGGAGTTCGTCTGCGACGCGCTC 6278705 Query 42960 CCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCC 43019 ||||| | || |||||||||||| |||||||||| || |||||||| ||| ||||||| Sbjct 6278704 CCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCC 6278645 Query 43020 GACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAAC-ACGCCGTGCCCCTTCG 43077 |||| ||||| || | |||| || | |||||| |||| ||| |||| Sbjct 6278644 GACCGCCTCCTCATGGC-CCTGGGCTGCAAGAAGATGTACAACGTCGCC-AACCCATTCG 6278587 Query 43078 ACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCG 43137 ||| |||||| |||||| || |||||||||||||||| |||||||||||||||| || Sbjct 6278586 ACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCG 6278527 Query 43138 ACTACCAG 43145 |||||||| Sbjct 6278526 ACTACCAG 6278519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944309795638160