Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq6 91.5 1e-13 seq5 84.2 2e-11 seq9 82.4 6e-11 >seq6 Length=21794218 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| ||| |||| ||| ||||| ||||||||||||||||||||| || Sbjct 18102177 CCACCCCTGAGCCTCAGGACCAAATGGAGCGTTGACTCCTTCTGAATGTTGTAATCAGCT 18102118 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| || | || |||| |||||| || ||||| ||||| | |||||||| || Sbjct 18102117 AATGTGCGTCCATCTTCCAGTTGCTTCCCTGCAAAAATCAGCCTTTGCTGATCTGGGGGA 18102058 Query 34021 ACGCTCTCTTTGTCC 34035 | | |||||||||| Sbjct 18102057 ATACCCTCTTTGTCC 18102043 Score = 87.8 bits (96), Expect = 1e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTC-G 33968 || || ||||||| ||| || ||| ||||||||| ||||||||||| || || ||| | Sbjct 19646844 AGGCGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGC-AAGGGTCCG 19646786 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | | || || | |||||||||||||| ||||| |||||||| ||| || | | ||| Sbjct 19646785 CCCATCCTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTC 19646726 Query 34029 TTTGTCC 34035 |||||| Sbjct 19646725 CTTGTCC 19646719 >seq5 Length=20131956 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || || || || |||||||| || || ||| |||||||||||| ||||| || || Sbjct 16284690 ACCACCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCGGC 16284631 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || | ||||||| ||||||||||| || ||||| |||||||| || Sbjct 16284630 -AAGGGTGCGGCCATCGTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTC 16284577 Score = 82.4 bits (90), Expect = 6e-11 Identities = 112/153 (73%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || || || || ||||| ||| ||||||||| |||||||| || || Sbjct 16284233 CCTCCCCTGAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 16284174 Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | ||| || |||| || | || ||||||||||| ||||| |||||||| ||| | Sbjct 16284173 AGG-GTC-CTGCCGTCCTCGAGCTGTTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGG 16284116 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAA 34051 | | || ||| |||||| || ||| ||||| Sbjct 16284115 GAATGCCCTCCTTGTCCTGGATCTTTGCCTTAA 16284083 >seq9 Length=14105664 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| || |||| ||||| || |||||||||||||||||| || ||| Sbjct 7866251 CCACCCCTGAGCCTGAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGCC 7866192 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || | || ||||| |||||||| || ||||||| ||||||||||| Sbjct 7866191 AGTGTGCGTCCATCCTCCAACTGCTTGCCAGCGAATATCAAACGCTGCTGATC 7866139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397050345557782