Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6 131 4e-25 seq5 131 4e-25 seq1 131 4e-25 seq2 122 2e-22 seq4 116 9e-21 seq320 84.2 5e-11 >seq6 Length=21794218 Score = 131 bits (144), Expect = 4e-25 Identities = 169/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || | ||| || || || ||||| | ||| ||| || ||||| || |||| Sbjct 19646401 CATG-CCTCCCCTGAGCCTGAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGT 19646343 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || ||||| || || || | || || || |||||||| |||||||| || Sbjct 19646342 CAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCG 19646283 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || |||||||| || || |||||||| || || | || || | Sbjct 19646282 GAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCTGAGGACT 19646223 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| ||||| |||||||| ||||||||||| |||||||| Sbjct 19646222 CGACCTCAAGAGTGATGGTCTTTCCGGTCAGGGTCTTGACGAAGATCTGCAT 19646171 Score = 113 bits (124), Expect = 1e-19 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || ||||| || | || || || ||||||||||| || Sbjct 19269411 TGGCCACCACGGAGGCGGAGCACGAGGTGCAGGGTAGACTCCTTCTGGATATTATAATCT 19269470 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||| ||| || || || | ||||| || || ||||||| ||||| | | | Sbjct 19269471 GAGAGGAGGCGGCCATCCTCAAGCTGTTTCCCGGCAAAGATCAAGCGCTGCTCATCCGGT 19269530 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || ||||||||||| || || || || || |||| ||| || || Sbjct 19269531 GGAATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTATCAATAGTATCTGAGGACTCA 19269590 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| || |||||||| |||||||| || || |||||||| Sbjct 19269591 ACCTCAAGGGTGATGGTTTTCCCGGTGAGAGTCTTCACAAAGATCTGCAT 19269640 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| || || || || || | ||| ||| || || || || ||||| || Sbjct 19646625 CCACCCCTGAGCCTGAGCACCAGGTGGAGGGTGGATTCCTTCTGTATGTTGTAGTCAGCC 19646566 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || || ||||| |||||||| || ||| Sbjct 19646565 AGTGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGGG 19646506 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || |||||||| || || | || || || || Sbjct 19646505 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATCGTGTCCGAGGACTCGACC 19646446 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || || ||||||||||| |||||||| Sbjct 19646445 TCAAGTGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 19646399 Score = 96.9 bits (106), Expect = 8e-15 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || || | ||| | ||| || || ||||| || || || Sbjct 19646856 TGGCCACCACGGAGGCGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCC 19646797 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 || || || || || || || | || || || || |||||||||||||| || || Sbjct 19646796 GCAAGGGTCCGCCCATCCTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTG---GTCC 19646740 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || || || || |||||||| || || |||||||| || || | || || Sbjct 19646739 GGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCCGAGGAC 19646680 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||||| ||||| || || || |||||||| || |||||||| Sbjct 19646679 TCAACCTCCAAGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATCTGCAT 19646627 Score = 93.3 bits (102), Expect = 1e-13 Identities = 126/173 (73%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 269153 TCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCA 269212 |||| ||||| | ||| ||||||| || || ||||| ||||| || || || | ||| Sbjct 907504 TCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCA 907563 Query 269213 CGGCACTCGGTTATGAGAAAGTGTACAAT-TCGAAGAATCCCTTCGCCTTTATGGAACTA 269271 ||| ||||| | |||| ||||||| ||| || || |||| || ||||| || Sbjct 907564 TGGCGCTCGGCTGCAAGAAGATGTACAAGGTCGCC-AACCCGTTCGACTGGATGGAGCTC 907622 Query 269272 ATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA 269324 || || || | || ||||| ||||||||||| ||||| ||| ||||||| || Sbjct 907623 ATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCA 907675 Score = 93.3 bits (102), Expect = 1e-13 Identities = 126/173 (73%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 269153 TCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCA 269212 |||| ||||| | ||| ||||||| || || ||||| ||||| || || || || ||| Sbjct 6278691 TCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCA 6278632 Query 269213 CGGCACTCGGTTATGAGAAAGTGTACAAT-TCGAAGAATCCCTTCGCCTTTATGGAACTA 269271 ||| || || | |||| ||||||| ||| || || |||| || ||||| || Sbjct 6278631 TGGCCCTGGGCTGCAAGAAGATGTACAACGTCGCC-AACCCATTCGACTGGATGGAGCTC 6278573 Query 269272 ATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA 269324 || || || | || ||||| ||||||||||| ||||| ||| ||||||| || Sbjct 6278572 ATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCA 6278520 >seq5 Length=20131956 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | || || || || | || || || ||||| || ||||||||| Sbjct 2692004 CCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCG 2691945 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || |||||||| || ||||| || ||| Sbjct 2691944 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 2691885 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || |||||||| || || | || || || || Sbjct 2691884 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACC 2691825 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 2691824 TCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 2691778 Score = 123 bits (136), Expect = 6e-23 Identities = 168/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| | ||| | || || || || | ||| || || || ||||| |||||| Sbjct 16284692 TGACCACCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCG 16284633 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 || || ||||| || || || | || || || ||||||||||| ||||| || | Sbjct 16284632 GCAAGGGTGCGGCCATCGTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCAGGA 16284573 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGAT 288420 ||||| ||||| || |||||||| ||||| |||||||| || || | ||| ||| Sbjct 16284572 GGGATGCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCGGAGCTC--- 16284516 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || ||||| || || ||||||||||| || |||||||| Sbjct 16284515 TCAACCTCCAGAGTAATGGTCTTGCCTGTGAGAGTCTTGACAAAGATCTGCAT 16284463 Score = 111 bits (122), Expect = 4e-19 Identities = 145/198 (73%), Gaps = 12/198 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| || || ||||| || || || | || || || |||||| Sbjct 16284425 TCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAG 16284366 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| ||| |||||| || || || || |||||||| || || |||||| Sbjct 16284365 ATGAGTCTCTGCTGA---TCTGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTCACG 16284309 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || |||| || || ||||| || || ||||| ||||| |||||| Sbjct 16284308 TTGTCGATGGTGTCTGAGCTC---TCAACCTCGAGGGTAATAGTCTTGCCGGTGAGAGTC 16284252 Query 288457 TTGACGAATATCTGCATT 288474 |||||||| || |||||| Sbjct 16284251 TTGACGAAAATTTGCATT 16284234 Score = 102 bits (112), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || | ||| | || || || |||| ||| || || ||||| || ||||| || Sbjct 16284234 TCCTCCCCTGAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 16284175 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | ||||| || | ||||| || || |||||||||||||| || || || Sbjct 16284174 TAGGGTCCTGCCGTCCTCGAGCTGTTTGCCGGCAAAGATCAGACGCTGCTG---GTCCGG 16284118 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || || || || |||||||| || || || || || || || | |||| || || Sbjct 16284117 GGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTAACATTGTCAATGGTATCGGAGGACTC 16284058 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || |||| |||||||| || || ||||| Sbjct 16284057 CACCTCAAGGGTGATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 16284007 >seq1 Length=33916305 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | || || || || | || || || ||||| || ||||||||| Sbjct 9799250 CCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCG 9799309 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || |||||||| || ||||| || ||| Sbjct 9799310 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 9799369 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || |||||||| || || | || || || || Sbjct 9799370 ATCCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACC 9799429 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 9799430 TCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 9799476 >seq2 Length=27082872 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||| || || ||||| |||||||| || Sbjct 2373294 CCACCACGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGCA 2373353 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || || | || || || || ||||| |||||||| || ||| Sbjct 2373354 AGGGTCCTGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGG 2373413 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || || || || || || |||| || || || || Sbjct 2373414 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCAGAAGACTCCACC 2373473 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| |||||||||||||||||||| |||||||| Sbjct 2373474 TCAAGGGTGATAGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 2373520 Score = 118 bits (130), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | || || || |||| || || || ||||| || |||| Sbjct 2373746 CATG-CCACCACGGAGGCGGAGAACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGT 2373804 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || || | || || || | || || || |||||||| |||||||| ||| Sbjct 2373805 CAGCCAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCCG 2373864 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || |||||||| || || || ||||| || || | || || | Sbjct 2373865 GGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGACT 2373924 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||| ||||| ||||| || ||||||||||| ||||| |||||||| Sbjct 2373925 CCACCTCGAGGGTGATAGTCTTGCCAGTCAGAGTCTTTACGAAGATCTGCAT 2373976 Score = 116 bits (128), Expect = 9e-21 Identities = 169/236 (72%), Gaps = 12/236 (5%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || || || |||| || || || ||||| || |||||| Sbjct 2372835 TGACCACCACGGAGACGGAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCG 2372894 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 ||||| || || || || || | || || || ||||||||||||||||| || ||| Sbjct 2372895 GCGAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTG---GTCT 2372951 Query 288364 ---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTC 288417 ||||| || || || |||||||| || || ||||| || || || | || |||| Sbjct 2372952 GGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCAATGGTGTCCGAGCTC 2373011 Query 288418 GATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| | ||||| |||||||| |||| ||||| || || |||||||| Sbjct 2373012 ---TCAACTTCCAAAGTGATGGTCTTCCCAGTCAATGTCTTCACAAAGATCTGCAT 2373064 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||| || || || | || || || | || || || || || Sbjct 2373557 TTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCAAGCTGCTTGCCAGCAAA 2373616 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| |||||||| || ||||| || || || |||||||| || || || ||||| Sbjct 2373617 GATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTT 2373676 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || ||||| || ||||| ||||| ||||| || |||||||||||||| Sbjct 2373677 GTCAATGGTGTCAGAAGATTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGAGTCTTGAC 2373736 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 2373737 GAAGATCTGCAT 2373748 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || || | || || || ||||| |||||||| || Sbjct 2373066 CCACCACGGAGACGAAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCAGCA 2373125 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || || | || || || || ||||| |||||||| || ||| Sbjct 2373126 AGGGTCCTGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGG 2373185 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| || |||||||| || || ||||| || || || | ||| |||| || Sbjct 2373186 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTATCTGAGCTC---TCA 2373242 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||||||||| || || || |||||||| || |||||||| Sbjct 2373243 ACCTCCAGAGTGATCGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 2373292 >seq4 Length=21479432 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | || || || ||||| ||||||||||| Sbjct 18579304 CCACCACGGAGGCGCAGAACAAGGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCGGCA 18579245 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || |||||||| || ||||| || ||| Sbjct 18579244 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 18579185 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || || |||||||| || || | || || || || Sbjct 18579184 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGATGACTCGACC 18579125 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| ||||| || ||||| ||||| |||||||| Sbjct 18579124 TCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 18579078 Score = 114 bits (126), Expect = 3e-20 Identities = 168/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | || || || || | ||| ||| || ||||| ||||||| Sbjct 18578413 CATG-CCTCCACGAAGGCGGAGGACAAGGTGCAAGGTGGATTCCTTCTGGATGTTATAGT 18578355 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || || || || || || | || || || ||||| || |||||||| || | Sbjct 18578354 CTGCAAGTGTACGCCCATCCTCAAGCTGCTTGCCGGCGAATATAAGACGCTGCTGG---T 18578298 Query 288362 CTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 |||| |||||| || || |||||||| || || ||||| || || || | |||| | Sbjct 18578297 CTGGAGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTCACATTGTCAATCGTATCGGAGG 18578238 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || | ||||| ||||| || || || ||||| |||||||||||||| Sbjct 18578237 ACTCGACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAATATCTGCAT 18578183 >seq320 Length=2409 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || |||||||| || | || ||||| || || | ||||| || || || Sbjct 664 CCTTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCGATGGTGTCGCTGCTCTCGACCTCC 723 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||||||||| ||||| ||||| ||||| |||||||| Sbjct 724 AGCGTGATCGTCTTCCCCGTCAGCGTCTTCACGAAGATCTGCAT 767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179616750223898