Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq6 149 1e-30 >seq6 Length=21794218 Score = 149 bits (164), Expect = 1e-30 Identities = 306/452 (68%), Gaps = 6/452 (1%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||||||||| | ||||| || || || | || || || ||| Sbjct 907227 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTTC 907286 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 907287 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAG 907346 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| |||||||||||||| ||| | |||| || | || ||| Sbjct 907347 CTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTATACGACCTCCTC 907406 Query 243469 CAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525 | |||||| || | || || ||| | ||| || | || || || || | | Sbjct 907407 CGCGGCAAGCTCGACGAGTCC---CGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATC 907463 Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585 || | ||||||| | |||||||| | || | ||| | ||||||||| || ||| Sbjct 907464 GAGAGGGAATTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACCTC 907523 Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||| | ||||||||||| ||||| ||||||||| | |||| ||||| || | |||| Sbjct 907524 ATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTCGGCTGCAAGAAG 907583 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 ||||||| | ||||| || | || ||||||||||| || || || || || || Sbjct 907584 ATGTACAAGGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACC 907643 Query 243706 AACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| ||||| ||| | || || || Sbjct 907644 AACTTCTTCGAGAAGCGCGTCGGCGACTACCA 907675 Score = 129 bits (142), Expect = 1e-24 Identities = 300/450 (67%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| ||||| |||| | || || || || || | || || || ||| Sbjct 6278968 TTCGCCGAGCGCCTCGTTGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 6278909 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 6278908 TGCGCCATCTTCTGGCTAAAGAAGCGCGGCCTAATGCCGGGCCTCACGTTCTCCAACGAG 6278849 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| |||||||||||||| ||| | |||| || | || ||| Sbjct 6278848 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 6278789 Query 243469 CAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAACGA 243527 | |||||| | | | || ||| | ||| | | || || || || | ||| Sbjct 6278788 CGCGGCAAGCT-CGACGAGGTCCGCGTCCGCGAGATCGTTGCCGACGCCGTCGACATCGA 6278730 Query 243528 AAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCAT 243587 | ||| ||| | |||||||| | || | ||| | ||||||||| || ||||| Sbjct 6278729 GAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCAT 6278670 Query 243588 GGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGT 243647 | | ||||||||||| ||||| ||||||||| | |||| || || || | |||| | Sbjct 6278669 GAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCATGGCCCTGGGCTGCAAGAAGAT 6278610 Query 243648 GTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAA 243707 ||||||| | ||||| || | || ||||||||||| || || || || || || || Sbjct 6278609 GTACAACGTCGCCAACCCATTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAA 6278550 Query 243708 CTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||| ||||| ||| | || || || Sbjct 6278549 CTTCTTCGAGAAGCGCGTCGGCGACTACCA 6278520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102844800550850