Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq6 159 4e-34 >seq6 Length=21794218 Score = 159 bits (176), Expect = 4e-34 Identities = 316/457 (69%), Gaps = 18/457 (4%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 6278522 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 6278581 Query 125818 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 125872 | || |||||||| | ||| | || || ||| || |||| | |||| Sbjct 6278582 CCAGTCGAATGGGTTGGCGACGTTG---TACATCTTCTTG-CAGCCCAGGGCCAT-GAGG 6278636 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 125931 || || || | |||| |||| ||||||| ||| || |||||| |||| ||| Sbjct 6278637 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 6278696 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | || ||||||||||| ||| |||| || |||| || || ||||| || ||||| Sbjct 6278697 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCAACGAT 6278755 Query 125992 GGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGC 126048 || | | | | || | | | | ||| | | ||| | || ||| || ||| Sbjct 6278756 CTCGCGGACGCGGACCTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGC 6278812 Query 126049 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGG 126108 || || ||| || |||||||| ||||||||||| || || ||||| || || || Sbjct 6278813 GAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGCCCGG 6278872 Query 126109 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCC 126168 ||| || || |||||||| | |||||| || || || || || |||||||||||||| || Sbjct 6278873 CATTAGGCCGCGCTTCTTTAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCC 6278932 Query 126169 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 ||| ||||| ||||| |||| ||| ||||| || ||| Sbjct 6278933 CTCGACACAGGCGAAGGCAACGAGGCGCTCGGCGAAG 6278969 Score = 143 bits (158), Expect = 3e-29 Identities = 311/456 (68%), Gaps = 16/456 (4%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 907673 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 907614 Query 125818 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 125872 | || || ||||| | ||| | || || ||| || || | | |||| Sbjct 907613 CCAGTCGAACGGGTTGGCGACCTTG---TACATCTTCTTG-CAGCCGAG-CGCCATGAGC 907559 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 125931 || || || | |||| |||| ||||||| ||| || |||||| |||| ||| Sbjct 907558 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 907499 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | || ||||||||||| ||| ||| || |||| || || ||||| || ||||| Sbjct 907498 GCGACG-GGGAGCGCGTCGCAGACGAATTCCCTCTCGATGTCGACGGCGTCGGCGACGAT 907440 Query 125992 GGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCA--AAGTCTTGAAGAGTTCCACGGCA 126049 || | | | | | | | | | ||| | | ||| | || | || ||| Sbjct 907439 CTCGCGGACGCGGGACTCGTCGAGCTTGCCGCGGAGGAGGTCGTATAG-GAGGCA-GGCG 907382 Query 126050 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGC 126109 || || |||||| |||||||| ||||||||||| || || |||||| || || ||| Sbjct 907381 AAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 907322 Query 126110 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCC 126169 ||||| || |||||||| | |||||| || || || || || |||||||||||||| ||| Sbjct 907321 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCC 907262 Query 126170 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || || || ||||| || | ||| ||||| || ||| Sbjct 907261 TCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 907226 Score = 104 bits (114), Expect = 3e-17 Identities = 270/407 (66%), Gaps = 6/407 (1%) Strand=Plus/Plus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 ||||| || | || || || || || ||| |||| || | ||| | ||| || || Sbjct 21503595 CGATCGAACCTCCCAGGCCGAAGAAGCGCGGCGTCCAGCACATCGGGCCTGTTTGTGGCG 21503654 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 |||| |||| || || | | | |||| ||||||||||| |||| ||| || ||| Sbjct 21503655 GCGAGCACAATGACACCACTGTTGCCGGCAAATCCATCCATCTCCGTCAGGAGCTGGTTG 21503714 Query 10907 ATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGA 10964 ||||| || || | ||||| || | || | | | ||||||| || ||| | |||| Sbjct 21503715 ATGGTCTGCTCCCTCTCATCGTTTCC--GCCTCCGAGCCCCGCACCACGCTGCCTCCCGA 21503772 Query 10965 CGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGA 11024 ||||||| || ||||||||||| || || || || || | ||| || || | Sbjct 21503773 CGGCGTCGATCTCATCGATGAACACAATGCAAGGCGCCTTGGCCTTGGCCTTCTCGAACA 21503832 Query 11025 TATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAAC 11084 || | || || || |||||||| || || | || || || | | ||||| | Sbjct 21503833 GGTCCCTCACCCTGGACGCGCCGACACCGACGAAGAGCTCGACGAACTCCGAGGCGGCGC 21503892 Query 11085 ATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 11144 | || |||||| ||| || || || |||| ||| || || || || |||||||||| Sbjct 21503893 AGGAGAAGAAGGGCACGCCGGCCTCCCCGGCGACGGCACGCGCCAGCAGCGTCTTCCCCG 21503952 Query 11145 TCCCAGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 11190 | || || || |||| | |||| | | | |||||| |||| || Sbjct 21503953 TGCCGGGCGGGCCAACGAGGA-GGCATCCCTTGGGGATCTTGGCCCC 21503998 Score = 93.3 bits (102), Expect = 5e-14 Identities = 177/259 (68%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 10742 ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCT 10801 |||| ||| || |||||||| || |||| |||| | || || || ||||| || Sbjct 5198757 ATCTCCTCCCGGCCGCGCACGTCAGGGAGGGCGACGGACACCTGCCGGTCGAAGCGGCCC 5198816 Query 10802 GGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATG 10861 |||||||| || ||| |||| ||||| || ||||| || |||||||| || | || | Sbjct 5198817 GGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGCCGGTTGGTGGCCGCGATCACGATGACG 5198876 Query 10862 CCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGT 10921 || | || | || || |||||||| || | || || || | || || || | Sbjct 5198877 CCGCTGTCTCCGCCGAACCCGTCCATCTCGGTGAGCAGCTGGTTCAGCGTCTGCTCCCTC 5198936 Query 10922 TCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCAT 10979 || || ||| || | | | | |||| | ||| ||| ||||||||||| || || | Sbjct 5198937 TCGTCGTTCCCG--CCTCCGATGCCCGTGCCGCGCTGCCGCCCGACGGCGTCGATCTCGT 5198994 Query 10980 CGATGAAAACGATACACGG 10998 ||||||| |||| ||||| Sbjct 5198995 CGATGAAGACGAGGCACGG 5199013 Score = 84.2 bits (92), Expect = 3e-11 Identities = 193/285 (68%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849 ||||| || || || | ||| | ||| || ||||||||| | ||| || || || Sbjct 19066372 TCAAAACGTCCAGGTCTGAGTAAAGCGGAATCCAGGATATCAGCTCTGTTGGTGGCAGCA 19066431 Query 10850 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 10909 || |||| ||| || || | ||||| |||||||||||||||| | ||||| | Sbjct 19066432 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGTAACTGATTCAAA 19066491 Query 10910 GTTTGTTCGCGTTCATCATT--CGCGGGC-ATACCACCCGCACTGCGTTGCTTACCGACG 10966 || || || | ||||||||| | | | ||||| | | || |||| | || || Sbjct 19066492 GTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTCCCTCT---TTGCCTTCCAACA 19066548 Query 10967 GCGTCAATTTCATCGATGAAAACGATACACGGTTGATT-TTCACGGGCAACTTCAAAGAT 11025 || || |||||||| | || || || || || ||| | | || | ||| ||| | Sbjct 19066549 GCATCTATTTCATCAACAAATACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AG 19066607 Query 11026 ATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070 ||| || || | |||||| |||||||||||||| |||||||| Sbjct 19066608 ATCACGAACCCGGGAGGCACCAACACCCACAAACATCTCCACAAA 19066652 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 115174 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG 115233 ||| |||||||| || ||||||||||| || ||||||| || || | ||| | || Sbjct 2575132 TTGGGGCCTTGGAGTGCCAGCGTTGAAAAGAGTTGGTGAAGCATGAGTAAACCATCGCTG 2575073 Query 115234 GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGA 115293 |||||| || ||||| | | ||| |||||| ||| ||| || || | || Sbjct 2575072 AGACATCAGATGATAGGTTTTGATAGCGGACTCAATGTCATCCTTGTGTATTCCCACTGA 2575013 Query 115294 GACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTA 115353 || | ||| ||||||| || || |||| | | | ||| | ||| || |||||| Sbjct 2575012 AACTCTCATTAACATGTGCTGCGGCCTTTCAACAACCCTCCCACCAAGCTTCAAGAGGTA 2574953 Query 115354 ACTCTTCTCCAAGGTCTTGAGACCAAAATAACCAAAGTCATAGTCCCT 115401 | | |||||| ||||||| |||||| || || | || ||||||| Sbjct 2574952 AGACCTCTCCAGAGTCTTGAAACCAAAGTAGTCATAATCGAAGTCCCT 2574905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597334999902280