Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq6 132 5e-26 seq2 118 1e-21 seq5 113 5e-20 seq1 107 2e-18 seq4 100 3e-16 >seq6 Length=21794218 Score = 132 bits (146), Expect = 5e-26 Identities = 173/237 (73%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| || | | || ||||| || | ||| |||||| || || ||||| ||||| Sbjct 19645942 ACCTCCCCTGAGCCTCAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 19645883 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || || | || || |||||||| |||||||| ||||| ||||||||||| | || Sbjct 19645882 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGG 19645823 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | || |||||||||| ||| || ||||| ||| | | | || || || |||| Sbjct 19645822 AATGCCCTCCTTGTCCTGGATCTTGGCTTTGA-CGTTGTCAATGGTATCCGAGGACTCCA 19645764 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCACGC 42216 | || | |||||||| ||||| || || ||||| ||||| || ||||| | ||||| Sbjct 19645763 CCTCAAGGGTGATGGTCTTGCCGGTGAGTGTCTTCACAAAAATCTGCATCTGCACGC 19645707 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||||||| | ||| |||||| || || |||||||| || || |||||| | || || Sbjct 19646836 CACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTCCGCCCATCCTC 19646777 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || || || || || ||||||||||| | || | | |||||||||| Sbjct 19646776 AAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTG 19646717 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 ||| || || | ||| | | | |||||| || || || || | |||||||| | Sbjct 19646716 GATCTTGGCCTTCA-CGTTGTCGATCGTGTCCGAGGACTCAACCTCCAAGGTGATGGTCT 19646658 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || ||||| |||||||| ||||| Sbjct 19646657 TGCCAGTAAGGGTCTTGACAAAGATCTGCAT 19646627 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| |||||||| || || | || || |||||||| |||||||| Sbjct 19646133 TCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAG 19646074 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||||||||| | || | || |||||||||| ||| || || | ||| Sbjct 19646073 ATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTT 19646015 Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| || || || || | ||||||||| ||||| || || || || || Sbjct 19646014 GTCGATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCTTGCCGGTCAGGGTTTTGAC 19645955 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 19645954 GAAGATCTGCAT 19645943 Score = 109 bits (120), Expect = 6e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| |||||||| || || | || || |||||||| |||||||| Sbjct 19646361 TCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAG 19646302 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||||||||| | || | || |||||||||| ||| || || | ||| Sbjct 19646301 ATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTT 19646243 Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| || || || || | |||||||| || || || || ||||| || Sbjct 19646242 GTCGATCGTGTCTGAGGACTCGACCTCAAGAGTGATGGTCTTTCCGGTCAGGGTCTTGAC 19646183 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 19646182 GAAGATCTGCAT 19646171 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| |||||||| || || | || || |||||||| || || || Sbjct 19646589 TCCTTCTGTATGTTGTAGTCAGCCAGTGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAG 19646530 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||||||||| | || | | |||||||||| ||| || || | ||| Sbjct 19646529 ATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTT 19646471 Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| || || || || | |||||||| ||||| || || ||||| || Sbjct 19646470 GTCAATCGTGTCCGAGGACTCGACCTCAAGTGTGATGGTCTTGCCAGTAAGGGTCTTGAC 19646411 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 19646410 GAAGATCTGCAT 19646399 >seq2 Length=27082872 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| ||||| || |||| | || || |||||||| ||||| || Sbjct 2373558 TCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCAAGCTGCTTGCCAGCAAAG 2373617 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 2373618 ATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGA-CGTT 2373676 Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| |||||||| |||| |||||||| |||||||| || ||||| || Sbjct 2373677 GTCAATGGTGTCAGAAGATTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGAGTCTTGAC 2373736 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 2373737 GAAGATCTGCAT 2373748 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||| || | ||| |||||| || || || || ||||| || |||| | Sbjct 2373305 ACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTCCTGCC 2373364 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| ||||| || ||||| ||||||||||| | || | || ||||| Sbjct 2373365 ATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTT 2373424 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| || |||| | | | ||||| || ||||| || | ||||| Sbjct 2373425 GTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCAGAAGACTCCACCTCAAGGGTGAT 2373484 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || || ||||| || ||||| ||||| Sbjct 2373485 AGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 2373520 >seq5 Length=20131956 Score = 113 bits (124), Expect = 5e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 2691969 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 2691910 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || || | ||| Sbjct 2691909 GATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGT 2691851 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || ||||| || | ||||||||| || ||||| || ||||| | Sbjct 2691850 TGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCA 2691791 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 2691790 CGAAGATCTGCATCTT 2691775 Score = 100 bits (110), Expect = 3e-16 Identities = 168/239 (70%), Gaps = 8/239 (3%) Strand=Plus/Minus Query 41974 TTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 42033 |||| |||| || || | || | ||||| || | ||| |||||| |||||||||| Sbjct 16284697 TTTACTGACCACCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATATTGT 16284638 Query 42034 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 42093 | || || || || || | || || |||||||| || ||||| || || |||||||||| Sbjct 16284637 AGTCGGCAAGGGTGCGGCCATCGTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGT 16284578 Query 42094 CGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---G 42149 | | || | || ||||||||| ||| || || | ||| | | | ||||| | Sbjct 16284577 CAGGAGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCGGAG 16284519 Query 42150 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || || | || ||||| ||||| || || ||||| |||||||| ||||| Sbjct 16284518 CTC---TCAACCTCCAGAGTAATGGTCTTGCCTGTGAGAGTCTTGACAAAGATCTGCAT 16284463 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| || |||| |||| || ||||| || || || || Sbjct 16284198 CTCCTTCTGGATGTTGTAGTCAGCTAGGGTCCTGCCGTCCTCGAGCTGTTTGCCGGCAAA 16284139 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || |||||||||| ||| ||| || | | Sbjct 16284138 GATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTAACATT 16284079 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | || ||| || ||||| || | |||||||| || || || | ||||| || Sbjct 16284078 GTCAATGGTATCGGAGGACTCCACCTCAAGGGTGATGGTCTTTCCAGTCAAGGTCTTGAC 16284019 Query 42197 AAAGATTTGCAT 42208 |||||||||||| Sbjct 16284018 AAAGATTTGCAT 16284007 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||||||| || || | ||||||||| |||| |||||||||||||||| |||| Sbjct 16547623 AAAAATTTTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 16547682 Query 57058 TCACCACTATACTAC 57072 ||||||||||||||| Sbjct 16547683 TCACCACTATACTAC 16547697 >seq1 Length=33916305 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 9799285 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 9799344 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | | |||||||||| ||| || || | ||| Sbjct 9799345 GATGAGGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGT 9799403 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || ||||| || | ||||||||| || ||||| || ||||| | Sbjct 9799404 TGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCA 9799463 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 9799464 CGAAGATCTGCATCTT 9799479 >seq4 Length=21479432 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 |||| ||| |||||| || || || || ||||| || || || | || || |||||| Sbjct 18578841 TGCAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTGCGACCATCCTCGAGCTGC 18578782 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 || || ||||| ||||| ||||||||||| | || | || ||||||||| ||| || Sbjct 18578781 TTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATCTTG 18578722 Query 42126 TGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 || | ||| | | | ||||| || || || || | |||||||| ||||| || Sbjct 18578721 GCCTTCA-CGTTGTCGATGGTGTCCGATGACTCGACCTCCAAGGTGATGGTCTTGCCAGT 18578663 Query 42185 TAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || ||||||||||| Sbjct 18578662 GAGGGTCTTCACGAAGATTTGCAT 18578639 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 ||||| ||| ||||| || || || || || || || || ||| | || || |||||| Sbjct 18578385 TGCAAGGTGGATTCCTTCTGGATGTTATAGTCTGCAAGTGTACGCCCATCCTCAAGCTGC 18578326 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 || || |||||||| || ||||||||||| | || | | |||||||||| ||| || Sbjct 18578325 TTGCCGGCGAATATAAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGGATCTTA 18578266 Query 42126 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 42185 || | | | | ||| ||| || || || || | |||||||| ||||| || Sbjct 18578265 GCCTTCACATTGTCAATCGTATCGGAGGACTCGACCTCCAAGGTGATGGTCTTGCCAGTG 18578206 Query 42186 AGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || || || ||||| Sbjct 18578205 AGGGTCTTAACGAATATCTGCAT 18578183 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 ||||| ||| |||||| || || || || || || || || || | || || |||||| Sbjct 18578613 TGCAAGGTGGACTCCTTCTGGATGTTATAGTCTGCAAGGGTGCGGCCATCCTCGAGCTGC 18578554 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 || ||||| || ||||| ||||||||||| | ||| | | |||||||||| ||| || Sbjct 18578553 TTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTTG 18578494 Query 42126 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 42185 || | | | | ||||| ||| || || || | || || || ||||| || Sbjct 18578493 GCCTTCACATTGTCTATTGTGTCTGACGACTCGACCTCTAGGGTAATTGTCTTGCCAGTG 18578434 Query 42186 AGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || ||||| ||||| Sbjct 18578433 AGGGTCTTCACGAAGATCTGCAT 18578411 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || || || || || || || || | || || |||||||| || ||||| Sbjct 18579269 CTCCTTCTGGATGTTATAGTCGGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAA 18579210 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || ||||||||| ||| || || | ||| Sbjct 18579209 GATGAGGCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGT 18579151 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || || || || | |||||||| ||||| || || ||||| | Sbjct 18579150 TGTCGATGGTGTCCGATGACTCGACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTCA 18579091 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 18579090 CGAAGATCTGCAT 18579078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543195885711440