Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6 150 2e-31 seq5 113 4e-20 seq2 105 7e-18 seq1 98.7 1e-15 >seq6 Length=21794218 Score = 150 bits (166), Expect = 2e-31 Identities = 350/514 (68%), Gaps = 18/514 (4%) Strand=Plus/Minus Query 52328 GCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGAC-ACCGCCA 52386 |||||||| ||||| ||| | ||||| ||| |||||||| ||| | | ||| Sbjct 6279022 GCCGTGCGC-CGCAA---GGCCGACTGGGCCATGCGCTGGATCGACGGCGGCGAGCGCTT 6278967 Query 52387 CGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCT 52446 ||| ||||||| | || ||||||||| ||||||||| | || || || ||| || Sbjct 6278966 CGC----CGAGCGCCTCGTTGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCGGGCTCCT 6278911 Query 52447 TTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACG 52506 | ||||||||| | | || | | ||| ||||||| ||||| |||||| ||||| Sbjct 6278910 TCTGCGCCATCTTCTGGCTAAAGAAGCGCGGCCTAATGCCGGGCCTCACGTTCTCCAACG 6278851 Query 52507 AGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGC 52566 || | || || |||||||| || |||||| ||||| || |||||| |||| ||| | Sbjct 6278850 AGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTAC--GAC-C 6278794 Query 52567 GCGTGACCGAAAAATTGGATTCGGACACGATCCT-GAGCATGTTCAAGGAGGCGGTGGCT 52625 | | || || | || || | ||| ||| ||| | | || || | Sbjct 6278793 TCCTCCGCGGCAAGCTCGACGAGGTCCGCGTCCGCGAGATCGTTGCCG-ACGCCGTCGAC 6278735 Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAG 52685 ||||| | |||||| | | |||||| || |||| ||| | |||||||||| | Sbjct 6278734 ATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGAC 6278675 Query 52686 TCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA 52745 |||| || ||||||||||||| || || || || || | || || |||| || | Sbjct 6278674 CTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCATGGCCCT-GGGCTGCAA 6278616 Query 52746 -AAGTACTTCAACGCTCGC-AATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCA 52803 ||| | ||||| |||| || || || || | ||| | ||| || || |||||| Sbjct 6278615 GAAGATGTACAACG-TCGCCAACCCATTCGACTGGATGGAGCTCATCTCCCTGCAGGGCA 6278557 Query 52804 AGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||| ||||||||||| |||||||| || Sbjct 6278556 AGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 6278523 Score = 140 bits (154), Expect = 3e-28 Identities = 351/516 (68%), Gaps = 22/516 (4%) Strand=Plus/Plus Query 52328 GCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGAC-ACCGCCA 52386 |||||||| ||||| ||| | ||||| ||| |||||||| ||| | | ||| Sbjct 907173 GCCGTGCGC-CGCAA---GGCCGACTGGGCCATGCGCTGGATCGACGGCGGCGAGCGCTT 907228 Query 52387 CGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCT 52446 ||| ||||||| | || ||||||||| |||||||| | || || || ||| || Sbjct 907229 CGC----CGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCT 907284 Query 52447 TTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACG 52506 | ||||||||| | | || | | ||| | ||||| ||||| || ||| ||||| Sbjct 907285 TCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACG 907344 Query 52507 AGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGC 52566 || | || || |||||||| || || ||| ||||| || |||||| ||| | ||| | Sbjct 907345 AGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTC--CTATACGAC-C 907401 Query 52567 GCGTGACCGAAAAATTGGATTCG-GACACGA-TCCT-GAGCATGTTCAAGGAGGCGGTGG 52623 | | || || | || || | | || ||| ||| || || || || || | Sbjct 907402 TCCTCCGCGGCAAGCTCGA--CGAGTCCCGCGTCCGCGAG-ATCGTCGCCGACGCCGTCG 907458 Query 52624 CTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGC 52683 ||||| | ||| || | | |||||| || |||| ||| | |||||||||| Sbjct 907459 ACATCGAGAGGGAATTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCG 907518 Query 52684 AGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGC 52743 | |||| || ||||||||||||| || || || || ||| | || |||||| | || Sbjct 907519 ACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTCGG-CTGC 907577 Query 52744 CA-AAGTACTTCAACGCTCGC-AATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGG 52801 | ||| | ||| | |||| || ||||| || | ||| | ||| || || |||| Sbjct 907578 AAGAAGATGTACAAGG-TCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGG 907636 Query 52802 CAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||| ||||||||||| |||||||| || Sbjct 907637 CAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 907672 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || ||||||||||| || || || |||||||| || || |||| | Sbjct 19646592 GATTCCTTCTGTATGTTGTAGTCAGCCAGTGTGCGGCCATCCTCGAGCTGCTTGCCGGCA 19646533 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| |||||||| || ||||| || ||||| ||| || || | Sbjct 19646532 AAGATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTCACG 19646473 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | ||||| ||||| | || | || || ||||| || || || Sbjct 19646472 TTGTCAATCGTGTCCGAGGACTCGACCTCAAGTGTGATGGTCTTGCCAGTAAGGGTCTTG 19646413 Query 138601 ACAAAAATCTGCATGGCT 138618 || || ||||||||| || Sbjct 19646412 ACGAAGATCTGCATGCCT 19646395 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || || ||||| || || || || | Sbjct 19645908 GACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCG 19645849 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || || || || ||||| ||| || ||| | Sbjct 19645848 AAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTGACG 19645789 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| || | ||||||||||| | || | || || || || || || || Sbjct 19645788 TTGTCAATGGTATCCGAGGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGTGTCTTC 19645729 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 19645728 ACAAAAATCTGCAT 19645715 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || ||||||||||| || || || ||||| || || || || | Sbjct 19646136 GATTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCG 19646077 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||||||||| || || || ||||| ||| || || | Sbjct 19646076 AAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACG 19646017 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | ||||| ||||| | ||| | || || || ||||| ||||| Sbjct 19646016 TTGTCGATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCTTGCCGGTCAGGGTTTTG 19645957 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 19645956 ACGAAGATCTGCAT 19645943 >seq5 Length=20131956 Score = 113 bits (124), Expect = 4e-20 Identities = 148/200 (74%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| || ||||||||||| ||| | || | ||||||||| ||||| |||| Sbjct 16284200 GACTCCTTCTGGATGTTGTAGTCAGCT-AGGGTCCTGCCGTCCTCGAGCTGTTTGCCGGC 16284142 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 | |||| |||||||| |||||||| || || || || ||||| ||| ||| || | Sbjct 16284141 AAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTAAC 16284082 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||||| | | ||| |||| ||||||||||| | || | || || ||||||| || | Sbjct 16284081 ATTGT-CAATGGTATCGGAGGACTCCACCTCAAGGGTGATGGTCTTTCCAGTCAAGGTCT 16284023 Query 138599 TTACAAAAATCTGCATGGCT 138618 | ||||| || |||||| || Sbjct 16284022 TGACAAAGATTTGCATGCCT 16284003 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || || |||| Sbjct 2691971 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 2691912 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 2691911 AAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACG 2691852 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||||| | ||| | || || || ||||| || || Sbjct 2691851 TTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTC 2691792 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 2691791 ACGAAGATCTGCAT 2691778 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| |||||||||||||| || || | || | |||||||| || || || | Sbjct 16283972 GACTCCTTCTGAATGTTGTAGTCAGCCAGGGTCCTGCCA-TCCTCGAGCTGCTTGCCAGC 16283914 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA 138539 |||| ||||| || ||||| || || || || || ||||| ||| || || | Sbjct 16283913 GAAGATGAGACGTTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGAC 16283854 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||||| ||||| ||||| | || | || || ||||| || || || Sbjct 16283853 GTTGTCAATGGTGTCGGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGTGTCTT 16283794 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 16283793 CACAAAGATCTGCAT 16283779 >seq2 Length=27082872 Score = 105 bits (116), Expect = 7e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||||||||| ||||||||||| | || | |||||| || || || |||| Sbjct 2374009 TTGACTCCTTTTGGATGTTGTAGTCCGCAAGGGTCCTGCCGTCCTCCAGCTGCTTGCCGG 2374068 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| |||||||| || ||||| || || || || ||||| ||| || || | Sbjct 2374069 CAAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGA 2374128 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | |||||| | |||||||||||||| || | || || || ||||| || | Sbjct 2374129 CGTTATCGATGGTGTCAGACGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGTGTCT 2374188 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 2374189 TCACAAAGATCTGCAT 2374204 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| || ||||||||||| || || | || | ||||| || || || || | Sbjct 2373783 GACTCCTTCTGGATGTTGTAGTCAGCCAGGGTCCTGCCA-TCCTCCAGCTGCTTGCCAGC 2373841 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA 138539 |||| |||||||| || ||||| || || || || ||||| ||| || || | Sbjct 2373842 GAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC 2373901 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | ||||||||||||| || | || || ||||||||||| || Sbjct 2373902 GTTGTCAATGGTGTCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCAGTCAGAGTCTT 2373961 Query 138600 TACAAAAATCTGCATG 138615 ||| || ||||||||| Sbjct 2373962 TACGAAGATCTGCATG 2373977 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| || ||||| ||||| | || | || | |||||||| || || || | Sbjct 2373327 GACTCCTTCTGGATGTTATAGTCAGCAAGGGTCCTGCCA-TCCTCGAGCTGCTTGCCAGC 2373385 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 | |||| |||||||| |||||||| || || ||||| ||||| ||| || || | Sbjct 2373386 AAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC 2373445 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||||| | | ||||| | ||||||||||| | || | || || || |||||||| | Sbjct 2373446 ATTGT-CGATAGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGGTCAGAGTCT 2373504 Query 138599 TTACAAAAATCTGCATGGCT 138618 | || || ||||||||| || Sbjct 2373505 TGACGAAGATCTGCATGCCT 2373524 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGA 138479 || ||||| || ||||||||||| | || | || | ||||| || || || || | Sbjct 2373555 GATTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCA-TCCTCAAGCTGCTTGCCAGC 2373613 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA 138539 | |||| |||||||| ||||||||||| || || || ||||| ||| || || | Sbjct 2373614 AAAGATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGAC 2373673 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | || |||||||||| || | || || || |||||||| || Sbjct 2373674 GTTGTCAATGGTGTCAGAAGATTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGAGTCTT 2373733 Query 138600 TACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 2373734 GACGAAGATCTGCATG 2373749 >seq1 Length=33916305 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || || |||| Sbjct 9799283 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 9799342 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 9799343 AAGATGAGGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACG 9799402 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||||| | ||| | || || || ||||| || || Sbjct 9799403 TTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTC 9799462 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 9799463 ACGAAGATCTGCAT 9799476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496246947629520