Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6 91.5 1e-13 seq4 89.7 5e-13 seq5 86.0 6e-12 seq2 82.4 7e-11 >seq6 Length=21794218 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || ||||| || || ||||| |||||||||||||| | Sbjct 19269414 CCACCACGGAGGCGGAGCACGAGGTGCAGGGTAGACTCCTTCTGGATATTATAATCTGAG 19269473 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | | ||| || | ||||| || || | ||||| || |||| ||||| ||| Sbjct 19269474 AGGAGGCGGCCATCCTCAAGCTGTTTCCCGGCAAAGATCAAGCGCTGCTCATCCGGTGGA 19269533 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || || || || ||||| |||| || | || || || ||||| || Sbjct 19269534 ATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTATCAATAGTATCTGAGGACTCAACC 19269593 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||||| ||||| ||||| || ||||| || |||||| Sbjct 19269594 TCAAGGGTGATGGTTTTCCCGGTGAGAGTCTTCACAAAGATCTGCATC 19269641 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | |||||| | ||| || || || || |||||||| ||||| || || || Sbjct 19646172 ATGCCTCCCCTGAGCCTGAGCACAAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCA 19646113 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || ||| | || | || ||||||||||| Sbjct 19646112 GCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGA 19646053 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || || | || | || | ||||| || ||||| Sbjct 19646052 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATCGTGTCCGAGGACTC 19645994 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || | || |||||||| || ||||| || || || ||||| Sbjct 19645993 GACCTCAAGCGTGATGGTCTTGCCGGTCAGGGTTTTGACGAAGATCTGCAT 19645943 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | |||||| | ||| ||||| || || |||||||| ||||| || || || Sbjct 19646400 ATGCCTCCCCTGAGCCTGAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 19646341 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || ||| | || | || ||||||||||| Sbjct 19646340 GCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGA 19646281 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || || | || | || | ||||| || ||||| Sbjct 19646280 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATCGTGTCTGAGGACTC 19646222 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || ||||| | || || ||||| || || || || || || ||||| Sbjct 19646221 GACCTCAAGAGTGATGGTCTTTCCGGTCAGGGTCTTGACGAAGATCTGCAT 19646171 >seq4 Length=21479432 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | || || || ||||| || || ||||| ||||| ||||| ||| Sbjct 18579304 CCACCACGGAGGCGCAGAACAAGGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCGGCA 18579245 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| |||| || || || ||| | || | || ||||||||||| || Sbjct 18579244 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 18579185 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 |||||||| || || || || || || | || | || | |||||| || |||||||| Sbjct 18579184 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGATGACTCGAC 18579126 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | || | || |||||||| || || || || || || ||||| Sbjct 18579125 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 18579078 >seq5 Length=20131956 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 |||||| || || || || ||||| ||||| || || || | ||| ||| || Sbjct 16284444 CACTAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTC 16284385 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || || || ||| | || | || ||||| || || |||||||| || || || || Sbjct 16284384 CAGCTGCTTGCCAGCGAAGATGAGTCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 16284325 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || ||| || | || | || | |||||| || ||| || ||||| |||| || | Sbjct 16284324 GATCTTTGCCTTCA-CGTTGTCGATGGTGTCTGAGCTCTCAACCTCGAGGGTAATAGTCT 16284266 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| ||||| || || ||||||||||| Sbjct 16284265 TGCCGGTGAGAGTCTTGACGAAAATTTGCAT 16284235 >seq2 Length=27082872 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| || || || || || ||||| ||||| ||||| || Sbjct 2373291 ATACCACCACGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCA 2373350 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || || || || | || | || ||||||||||| Sbjct 2373351 GCAAGGGTCCTGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGG 2373410 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || |||||||| || || || || || |||| || | ||||| |||||||| Sbjct 2373411 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCAGAAGACTCC 2373470 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || |||||||| ||||| || || || || ||||| Sbjct 2373471 ACCTCAAGGGTGATAGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 2373520 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || || ||||| ||||||||||| || || || Sbjct 2373975 ATGCCACCACGGAGGCGGAGGACAAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCC 2374034 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || |||| || || || || | || | || ||||| ||||| Sbjct 2374035 GCAAGGGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCCGGG 2374094 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || |||| || | || | |||||| || ||||| Sbjct 2374095 GGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGA-CGTTATCGATGGTGTCAGACGACTC 2374153 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || |||||||| || || || ||||| || |||||| Sbjct 2374154 CACCTCGAGGGTGATAGTCTTGCCGGTCAGTGTCTTCACAAAGATCTGCATC 2374205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451989125750360