Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq8 136 5e-27 seq1 105 8e-18 seq3 91.5 2e-13 >seq8 Length=18224760 Score = 136 bits (150), Expect = 5e-27 Identities = 146/191 (76%), Gaps = 8/191 (4%) Strand=Plus/Plus Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593 || ||| ||||| ||||||||||||||||||||||| |||||||| |||||| | ||||| Sbjct 4907342 AGTAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCGTACCAAG 4907401 Query 7594 ACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACC-TTGACCATCAATGA 7652 | |||| |||||| | || ||||| || || | ||| |||| ||| | | | | | Sbjct 4907402 ATTAGCATGGTTGATGATATCAGCCCAAGTATTTATAACATGACCTTTGGCTAACTACAA 4907461 Query 7653 TGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGC-- 7710 | |||||||| ||||| ||||| |||||||| |||||| | |||| ||| | ||| Sbjct 4907462 ---ATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATGCTACTAATACCTAAAGCGC 4907518 Query 7711 --AGTGAACCA 7719 ||||||||| Sbjct 4907519 ATAGTGAACCA 4907529 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/146 (74%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 6716 ACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAG 6775 || |||||||||||||| || || | | |||| ||||| || || || | |||||| | | Sbjct 15456922 ACTCCCATCATATGAAATGGATTTAACTTCCAATTGTGAAATCCTTGGAAGAAGAGGATG 15456981 Query 6776 AAGCGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGA 6835 | | ||||| ||||| || ||||| |||| |||||||||||| || || || | Sbjct 15456982 GATCAAAATATTGCTGC-ACTCCAAAACTCGGCACAAAGAACCAACCAGATTGCCCCGGT 15457040 Query 6836 GGATACATGAGAAAGACAGACACAAA 6861 |||| || || || ||||| ||||| Sbjct 15457041 GGATTAATTAGGAATACAGAAACAAA 15457066 >seq1 Length=33916305 Score = 105 bits (116), Expect = 8e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 8053 CATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGC 8112 |||| | ||||||||| |||||||| | ||| || | | ||| | || || || || Sbjct 8033728 CATACCATCAGAGAAACTTCCTTGACCAATAGGGTAAATCAAGAAAATAGTAGTAGCAGC 8033787 Query 8113 AGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAG 8172 ||||| ||||||| ||||| ||| ||||| ||||||||||| |||||| || || Sbjct 8033788 TGCAACAAGAGCAGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAG 8033847 Query 8173 TTCCCACTCACGACCCATGTA 8193 |||||||||||||||||| || Sbjct 8033848 TTCCCACTCACGACCCATATA 8033868 >seq3 Length=29620734 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 6665 ACAGTAGCACCGTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATC 6724 ||||| || | |||||||| |||| || ||||||| | || || || |||||| Sbjct 22065048 ACAGTTGCCTCACGAATAGCATGTAGCAGAGCCACACCTAATACTCCAGCAACTCCCATC 22064989 Query 6725 ATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAAT 6784 |||||||| ||||| ||||| ||||| || | || | ||||| | |||||| ||| Sbjct 22064988 ATATGAAATGGGTTCGATGTCCAATTGTGAAATTCTTGGAAAAAGAGGATGAAGCGAAAT 22064929 Query 6785 ATCGCTGCAACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATG 6844 |||||||| || ||| ||| ||||||| | | ||| || || || ||||| || Sbjct 22064928 ATCGCTGCTACCATAAAACTTGGCACAAAGAAGAAGCCGGATTGCCCCAGTGGATAAATT 22064869 Query 6845 AGAAA 6849 || || Sbjct 22064868 AGGAA 22064864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622105428589040