Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6 156 5e-33 >seq6 Length=21794218 Score = 156 bits (172), Expect = 5e-33 Identities = 315/457 (69%), Gaps = 18/457 (4%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| || | ||| ||| |||||| Sbjct 6278522 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 6278581 Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345 | || |||||||| | ||| | || || ||| || |||| | |||| Sbjct 6278582 CCAGTCGAATGGGTTGGCGACGTTG---TACATCTTCTTG-CAGCCCAGGGCCAT-GAGG 6278636 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 127404 || || || | |||| |||| ||||||| ||| || |||||| |||| ||| Sbjct 6278637 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 6278696 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | || ||||||||||| ||| |||| || |||| ||||| || || || ||||| Sbjct 6278697 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCAACGAT 6278755 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAGC 127521 || | | | || | | | | ||| | | ||| | || ||| || || Sbjct 6278756 CTCGCGGACGCGGACCTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CAG-GC 6278812 Query 127522 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581 || || ||| || |||||||| ||||||||||| || || ||||| || || || Sbjct 6278813 GAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGCCCGG 6278872 Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641 ||| || || |||||||| | |||||| || || || || ||||| ||||||||||| || Sbjct 6278873 CATTAGGCCGCGCTTCTTTAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCC 6278932 Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 ||| ||||| ||||| |||| || |||||||| ||| Sbjct 6278933 CTCGACACAGGCGAAGGCAACGAGGCGCTCGGCGAAG 6278969 Score = 143 bits (158), Expect = 3e-29 Identities = 311/456 (68%), Gaps = 16/456 (4%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| || | ||| ||| |||||| Sbjct 907673 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 907614 Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345 | || || ||||| | ||| | || || ||| || || | | |||| Sbjct 907613 CCAGTCGAACGGGTTGGCGACCTTG---TACATCTTCTTG-CAGCCGAG-CGCCATGAGC 907559 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 127404 || || || | |||| |||| ||||||| ||| || |||||| |||| ||| Sbjct 907558 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 907499 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | || ||||||||||| ||| ||| || |||| ||||| || || || ||||| Sbjct 907498 GCGACG-GGGAGCGCGTCGCAGACGAATTCCCTCTCGATGTCGACGGCGTCGGCGACGAT 907440 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTTGAAGAGTTCCACAGCA 127522 || | | | | | | | | ||| | | ||| | || | || || Sbjct 907439 CTCGCGGACGCGGGACTCGTCGAGCTTGCCGCGGAGGAGGTCGTATAG-GAGGCAG-GCG 907382 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || |||||| |||||||| ||||||||||| || || |||||| || || ||| Sbjct 907381 AAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 907322 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 ||||| || |||||||| | |||||| || || || || ||||| ||||||||||||||| Sbjct 907321 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCC 907262 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 || || || ||||| || | || |||||||| ||| Sbjct 907261 TCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 907226 Score = 102 bits (112), Expect = 1e-16 Identities = 273/413 (66%), Gaps = 6/413 (1%) Strand=Plus/Plus Query 12657 ATCTTCTCGCGTCCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCT 12716 |||| ||| || |||||||| || |||| |||| | || || || ||||| || Sbjct 5198757 ATCTCCTCCCGGCCGCGCACGTCAGGGAGGGCGACGGACACCTGCCGGTCGAAGCGGCCC 5198816 Query 12717 GGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATG 12776 |||||||| || ||| |||| ||||| || ||||| || |||||||| || | || | Sbjct 5198817 GGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGCCGGTTGGTGGCCGCGATCACGATGACG 5198876 Query 12777 CCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGT 12836 || | || |||| || |||||||| || | || || || | || || || | Sbjct 5198877 CCGCTGTCTCCGCCGAACCCGTCCATCTCGGTGAGCAGCTGGTTCAGCGTCTGCTCCCTC 5198936 Query 12837 TCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGT 12894 || || ||| || | | | | |||| | ||| ||| ||||||||||| || |||| Sbjct 5198937 TCGTCGTTCCCG--CCTCCGATGCCCGTGCCGCGCTGCCGCCCGACGGCGTCGATCTCGT 5198994 Query 12895 CAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCT 12954 | ||||| |||| ||||| || | ||| | || | || ||||| | | Sbjct 5198995 CGATGAAGACGAGGCACGGCGCGTTGGCCTTGGCCTTGTTGAACAGGTCGCGCACCCGCG 5199054 Query 12955 TGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGG 13013 || || || || | |||||||| | || | | | ||| ||| | || ||||||| Sbjct 5199055 ACGCGCCAACGCCGATGAACATCTCGATGAACTCCGAGCCGG-ACAGCGAGAAGAAGGGG 5199113 Query 13014 ACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || | || || ||||| || | || || || |||||||||||||| || Sbjct 5199114 ACACCAGCCTCCCCGGCGATCGCCCTCGCCAGCAGCGTCTTCCCCGTCCCCGG 5199166 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 117135 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG 117194 ||| |||||||| || ||||||||||| || ||||||| || || | ||| | || Sbjct 2575132 TTGGGGCCTTGGAGTGCCAGCGTTGAAAAGAGTTGGTGAAGCATGAGTAAACCATCGCTG 2575073 Query 117195 GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGA 117254 |||||| || ||||| | | | || |||||| ||| ||| || || | ||| Sbjct 2575072 AGACATCAGATGATAGGTTTTGATAGCGGACTCAATGTCATCCTTGTGTATTCCCACTGA 2575013 Query 117255 GACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTA 117314 || | ||| ||||||| || || |||| | | | ||| | ||| || |||||| Sbjct 2575012 AACTCTCATTAACATGTGCTGCGGCCTTTCAACAACCCTCCCACCAAGCTTCAAGAGGTA 2574953 Query 117315 ACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTCCCT 117362 | | |||||| ||||||| |||||| ||| || | || ||||||| Sbjct 2574952 AGACCTCTCCAGAGTCTTGAAACCAAAGTAGTCATAATCGAAGTCCCT 2574905 Score = 84.2 bits (92), Expect = 3e-11 Identities = 193/285 (68%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 ||||| || || || | ||| | ||| || ||||||||| | ||| || || || Sbjct 19066372 TCAAAACGTCCAGGTCTGAGTAAAGCGGAATCCAGGATATCAGCTCTGTTGGTGGCAGCA 19066431 Query 12765 ATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 12824 || |||| ||| || || | || || |||||||||||||||| | ||||| | Sbjct 19066432 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGTAACTGATTCAAA 19066491 Query 12825 GTTTGTTCACGTTCATCATT--CGCGGGC-ATACCACCCGCACTGCGTTGCTTACCGACG 12881 || || || | ||||||||| | | | ||||| | | || |||| | || || Sbjct 19066492 GTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTCCCTCT---TTGCCTTCCAACA 19066548 Query 12882 GCGTCAATTTCGTCAATGAAAACGATACACGGTTGATT-TTCACGGGCAACTTCAAAGAT 12940 || || ||||| |||| || || || || || ||| | | || | ||| ||| | Sbjct 19066549 GCATCTATTTCATCAACAAATACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AG 19066607 Query 12941 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 ||| || || | |||||| ||||||||||||||||||||||| Sbjct 19066608 ATCACGAACCCGGGAGGCACCAACACCCACAAACATCTCCACAAA 19066652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613488096919560