Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6 203 5e-47 >seq6 Length=21794218 Score = 203 bits (224), Expect = 5e-47 Identities = 498/743 (67%), Gaps = 28/743 (4%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || ||| || ||||| | |||| ||||| Sbjct 907658 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAACGGGTT 907599 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 || | || |||| | ||||| ||| |||| | ||| || || || || Sbjct 907598 GGCGACCTTGTACATCTTCTTGCAGCCGAGCGCCATGAGCAGGCGGTCGGCGACGAACTC 907539 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | || | ||| || || | ||| ||||||||||| || | Sbjct 907538 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGACGGGGAGCGCGTCGCA 907479 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGT---TCGT 159884 | || ||| |||| || ||||| || |||| || |||| ||| ||| || |||| Sbjct 907478 GACGAATTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGCG-GACGCGGGACTCGT 907420 Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | ||||||| | | |||| | | |||||||| || ||||||||||| || | Sbjct 907419 ---CGAGCTTGCCGCGGAGGAGGTCGT---ATAGGAGGCAGGCGAAGTCGCAGTGGAGGC 907366 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| || ||||||| ||||||||| | | ||||||||||||||| || ||| | Sbjct 907365 CCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCGCGCTTCT 907306 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| || |||| |||| ||| | | | | || ||||||||||| ||| || || Sbjct 907305 TGAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCAGGCGAAG 907247 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122 || ||||| | ||| | || ||| | | | | | | |||| | ||||||| || Sbjct 907246 GCGACGAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCAGCGCATGGCCCAGTC 907191 Query 160123 AGCCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCT 160178 ||| ||||| ||||||| | | |||| |||| || | | ||||| || Sbjct 907190 GGCC----TTGCGGCGCACGGCGGGGACGGTGTCGATGGCGCGGAAGAGGCGGTCCTTCT 907135 Query 160179 CCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTT 160238 | | || ||| || | | |||| ||||||||| || | ||| | || | Sbjct 907134 CGACGTCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCT 907075 Query 160239 CGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGA 160298 ||||||| ||||| ||| |||||| ||||| |||||| || ||| Sbjct 907074 CGATGGCGATCTGGAAGCCGTAGAAGGCGCGTGCCTCGGCGACCTGCACGTCGGACATGA 907015 Query 160299 ACCTTTGAC-CCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACG 160357 ||| | ||| | || || | || | ||||||| |||||| ||||| || | |||| Sbjct 907014 ACC-TGGACGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCCGCGAAGAAGGCGAGCACG 906956 Query 160358 TGAGAGATGAAATGTCTCTCGTC 160380 || |||||||| || |||||||| Sbjct 906955 TGGGAGATGAAGTGCCTCTCGTC 906933 Score = 178 bits (196), Expect = 2e-39 Identities = 490/740 (66%), Gaps = 22/740 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || ||| || ||||| | |||||||||| Sbjct 6278537 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAATGGGTT 6278596 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||| || |||| | || || ||| || | | ||| || || || || Sbjct 6278597 GGCGACGTTGTACATCTTCTTGCAGCCCAGGGCCATGAGGAGGCGGTCGGCGACGAACTC 6278656 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | || | ||| || || | ||| ||||||||||| || | Sbjct 6278657 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGACGGGGAGCGCGTCGCA 6278716 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGTTCGTACC 159887 | |||||| |||| || ||||| || |||| || |||| ||| ||| || | | Sbjct 6278717 GACGAACTCCCTCTCGATGTCGACGGCGTCGGCAACGATCTCGCG-GACGCGGACCTCGT 6278775 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | ||||||| | | |||| | | |||||||| || |||||||||||||| |||| Sbjct 6278776 CGAGCTTGCCGCGGAGGAGGTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGCAGGCCCT 6278832 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||||||| ||||||||| | ||||||||||||| | || ||| || | Sbjct 6278833 CGTCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGCCCGGCATTAGGCCGCGCTTCTTTA 6278892 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| |||| ||| | | | | || ||||| ||||| || || || || Sbjct 6278893 GCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACACAGGCGAAGGCA 6278951 Query 160067 ACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 ||||| | ||| | || ||| | | | | | | |||| | ||||||| || || Sbjct 6278952 ACGAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCAGCGCATGGCCCAGTCGGC 6279007 Query 160126 CTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCT 160181 | ||||| ||||||| | | || | |||| || | | ||||| ||| Sbjct 6279008 C----TTGCGGCGCACGGCGGGGACGGTGTCTATGGCGCGGAAGAGGCGGTCCTTCTCGA 6279063 Query 160182 TCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGA 160241 | || ||| || | | |||| ||||||||| || | ||| | || |||| Sbjct 6279064 CGTCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCTCGA 6279123 Query 160242 TGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACC 160301 |||| ||||| ||| |||||| ||||| |||||| || |||||| Sbjct 6279124 TGGCGATCTGGAAGCCGTAGAAGGCGCGTGCCTCGGCGACCTGCACGTCGGACATGAACC 6279183 Query 160302 TTTGAC-CCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGA 160360 | ||| | || || | || | ||||| | ||||| ||||| |||| |||||| Sbjct 6279184 -TGGACGCGAGGTTCTCGAGCACGATGCCGTCCGACGCCGCGAAGAAGGCCAGCACGTGG 6279242 Query 160361 GAGATGAAATGTCTCTCGTC 160380 |||||||| || | |||||| Sbjct 6279243 GAGATGAAGTGGCGCTCGTC 6279262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795130440854960