Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4 168 2e-36 seq2 152 1e-31 seq6 149 1e-30 seq5 147 5e-30 seq1 147 5e-30 seq3 122 2e-22 seq9 120 7e-22 seq7 104 6e-17 >seq4 Length=21479432 Score = 168 bits (186), Expect = 2e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||||||||| || || |||||||| |||| ||| |||||||| | || Sbjct 18578859 CGAAGACGAAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTG 18578800 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| |||||||||||||| |||||||||||||| || ||| Sbjct 18578799 CGACCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCT 18578740 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| |||| |||||| | || || || ||||| Sbjct 18578739 TCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGATGACTCGACCTCCAAG 18578680 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || ||||| || ||||| Sbjct 18578679 GTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATTTG 18578642 Score = 163 bits (180), Expect = 7e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| |||||||| || ||||||||||| |||| ||| ||||| || | || Sbjct 18579298 CGGAGGCGCAGAACAAGGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCGGCAAGGGTG 18579239 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| |||||||||||||| |||||||||||||| || ||| Sbjct 18579238 CGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCT 18579179 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| |||| |||||| | || || || ||||| Sbjct 18579178 TCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGATGACTCGACCTCCAAG 18579119 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || ||||| || || || Sbjct 18579118 GTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTG 18579081 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||||||||| | || || ||||| |||| ||| ||||| || | || Sbjct 18578403 CGAAGGCGGAGGACAAGGTGCAAGGTGGATTCCTTCTGGATGTTATAGTCTGCAAGTGTA 18578344 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| |||||||| || |||||||||||||| ||| ||||| Sbjct 18578343 CGCCCATCCTCAAGCTGCTTGCCGGCGAATATAAGACGCTGCTGGTCTGGAGGGATTCCC 18578284 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| || | || || | | || || ||||| Sbjct 18578283 TCCTTGTCCTGGATCTTAGCCTTCACATTGTCAATCGTATCGGAGGACTCGACCTCCAAG 18578224 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || || || || Sbjct 18578223 GTGATGGTCTTGCCAGTGAGGGTCTTAACGAATATCTG 18578186 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||||||||| | || |||||||| |||| ||| ||||| || | || Sbjct 18578631 CGAAGGCGGAGGACAAGGTGCAAGGTGGACTCCTTCTGGATGTTATAGTCTGCAAGGGTG 18578572 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || || |||||||||||||||||||| || ||||| Sbjct 18578571 CGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATTCCC 18578512 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| || | ||||||| | || || || | Sbjct 18578511 TCCTTGTCCTGGATCTTGGCCTTCACATTGTCTATTGTGTCTGACGACTCGACCTCTAGG 18578452 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || ||||| || || || Sbjct 18578451 GTAATTGTCTTGCCAGTGAGGGTCTTCACGAAGATCTG 18578414 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||||||||| | || |||||||| |||| ||| ||||| || | || Sbjct 18579070 CGAAGGCGGAGGACAAGGTGCAAGGTGGACTCCTTCTGGATGTTATAGTCTGCAAGGGTG 18579011 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| |||||||||||||| |||||||||||||| || ||| Sbjct 18579010 CGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCT 18578951 Query 199529 TCTCGCTCCTGAATCTT 199545 || ||||| ||||| Sbjct 18578950 TCCTTGTCCTGGATCTT 18578934 >seq2 Length=27082872 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||||| |||| ||| |||||||| | ||||| ||||| Sbjct 2373081 AGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCAGCAAGGGTCCTGCCATCC 2373140 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||||||||||||||||||||| || ||||| ||| Sbjct 2373141 TCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCC 2373200 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| ||| |||| | || || |||| ||||||||| Sbjct 2373201 TGGATCTTGGCCTTCACATTGTCGATGGTATCTGAGCTCTCAACCTCCAGAGTGATCGTC 2373260 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| || || Sbjct 2373261 TTGCCTGTGAGGGTCTTGACAAAGATCTG 2373289 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||||||||| ||||| ||||| |||| |||||||||||| | ||||| ||||| Sbjct 2373537 AGGACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCC 2373596 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| |||||||||||||||||| || || || ||| Sbjct 2373597 TCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC 2373656 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | |||||| | | ||| || || | ||||| ||| Sbjct 2373657 TGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAAGATTCCACCTCGAGGGTGATGGTC 2373716 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| ||||| || || || || || Sbjct 2373717 TTGCCCGTCAGAGTCTTGACGAAGATCTG 2373745 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||||||||| || ||||||||||||| ||||||||| || | ||||| || || Sbjct 2373993 AGGACAAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCCGCAAGGGTCCTGCCGTCC 2374052 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| ||||||||||||||||| ||||| || || || ||| Sbjct 2374053 TCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 2374112 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | ||||| ||| Sbjct 2374113 TGGATCTTAGCCTTGACGTTATCGATGGTGTCAGACGACTCCACCTCGAGGGTGATAGTC 2374172 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || |||||||| || || Sbjct 2374173 TTGCCGGTCAGTGTCTTCACAAAGATCTG 2374201 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| || ||||||||||| |||| |||||||||||||| ||||| ||||| Sbjct 2373765 AGAACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTCCTGCCATCC 2373824 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || |||||||||||||||||||| ||||| || || || ||| Sbjct 2373825 TCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 2373884 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | |||||| | | || || || | ||||| ||| Sbjct 2373885 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGACTCCACCTCGAGGGTGATAGTC 2373944 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || || || || Sbjct 2373945 TTGCCAGTCAGAGTCTTTACGAAGATCTG 2373973 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || || |||||||| |||| ||||||||| || | || | ||||| Sbjct 2372853 AGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCATCC 2372912 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||||||||| |||||||||||||| || || || || ||| Sbjct 2372913 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCC 2372972 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | |||||| | | || || ||||| ||||| ||| Sbjct 2372973 TGGATCTTGGCCTTCACATTATCAATGGTGTCCGAGCTCTCAACTTCCAAAGTGATGGTC 2373032 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || |||||||| || || Sbjct 2373033 TTCCCAGTCAATGTCTTCACAAAGATCTG 2373061 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||||| |||| ||| |||||||| | ||||| ||||| Sbjct 2373309 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTCCTGCCATCC 2373368 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||||||||||||||||||||| || ||||| ||| Sbjct 2373369 TCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCC 2373428 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| ||||| | | || || || | ||||| ||| Sbjct 2373429 TGGATCTTGGCCTTGACATTGTCGATAGTGTCAGAAGACTCCACCTCAAGGGTGATAGTC 2373488 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || || || || Sbjct 2373489 TTGCCGGTCAGAGTCTTGACGAAGATCTG 2373517 Score = 89.7 bits (98), Expect = 1e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || |||||||| || |||||| |||| ||||| ||||| |||| || |||||| ||||| Sbjct 2373850 CTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCAGGACCCTGGCTGACTACAACATCCAG 2373791 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 || ||||| || |||||||||||| Sbjct 2373790 AAGGAGTCGACCCTTCACCTTGTT 2373767 >seq6 Length=21794218 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || || || ||||||||||| || || ||||| |||| |||||||||||||| || | Sbjct 19646160 AGCCTGAGCACAAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGG 19646101 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| || |||||||| || ||||||||||||||||||||||||||| || || || Sbjct 19646100 CCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCC 19646041 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| ||||| ||||||| |||| ||||| | | || || || | |||| Sbjct 19646040 TTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCCGAGGACTCGACCTCAAGCGTG 19645981 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || || ||||| || || || || Sbjct 19645980 ATGGTCTTGCCGGTCAGGGTTTTGACGAAGATCTG 19645946 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || ||||| || ||||| || || |||||||| |||| |||||||||||||| || | Sbjct 19645932 AGCCTCAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGG 19645873 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| || |||||||| || ||||||||||||||||||||||| || ||| || || Sbjct 19645872 CCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCC 19645813 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| ||||| || ||| || | ||| || | | || || || | ||| Sbjct 19645812 TTGTCCTGGATCTTGGCTTTGACGTTGTCAATGGTATCCGAGGACTCCACCTCAAGGGTG 19645753 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || ||||| || ||||||||||| || Sbjct 19645752 ATGGTCTTGCCGGTGAGTGTCTTCACAAAAATCTG 19645718 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || || || ||||| ||||| || || ||||| |||| |||||||||||||| || | Sbjct 19646388 AGCCTGAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGG 19646329 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| || |||||||| || ||||||||||||||||||||||||||| || || || Sbjct 19646328 CCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCC 19646269 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| ||||| ||||||| |||| ||||||| | || || || | ||| Sbjct 19646268 TTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCTGAGGACTCGACCTCAAGAGTG 19646209 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || || || || || || || || Sbjct 19646208 ATGGTCTTTCCGGTCAGGGTCTTGACGAAGATCTG 19646174 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| || |||||||| |||| |||||| || || | |||| ||||| || |||||| Sbjct 19646829 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTCCGCCCATCCTCAAGCTGC 19646770 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||| ||||| ||||||||||||||||| ||| || || ||||| ||||| Sbjct 19646769 TTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTG 19646710 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||||||| |||| ||||| | | || || ||||| ||||| ||||| || || Sbjct 19646709 GCCTTCACGTTGTCGATCGTGTCCGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTA 19646650 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || Sbjct 19646649 AGGGTCTTGACAAAGATCTG 19646630 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || || || || |||||||| || || ||||| || | |||||||||||||| || | Sbjct 19646616 AGCCTGAGCACCAGGTGGAGGGTGGATTCCTTCTGTATGTTGTAGTCAGCCAGTGTGCGG 19646557 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| || |||||||| ||||| ||||||||||||||||||||||| || || || Sbjct 19646556 CCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGGGATACCCTCC 19646497 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| ||||| ||||||| || | ||||| | | || || || | ||| Sbjct 19646496 TTGTCCTGGATCTTGGCCTTCACGTTGTCAATCGTGTCCGAGGACTCGACCTCAAGTGTG 19646437 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || || || || || || || || Sbjct 19646436 ATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTG 19646402 Score = 86.0 bits (94), Expect = 1e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || |||||||| | ||||| || |||||||| || | |||||| ||||| || || | | Sbjct 18102168 AGCCTCAGGACCAAATGGAGCGTTGACTCCTTCTGAATGTTGTAATCAGCTAATGTGCGT 18102109 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||||||||| ||||| || || || || || | ||||| || || ||| || ||| Sbjct 18102108 CCATCTTCCAGTTGCTTCCCTGCAAAAATCAGCCTTTGCTGATCTGGGGGAATACCCTCT 18102049 Query 199532 CGCTCCTGAA 199541 ||||||| Sbjct 18102048 TTGTCCTGAA 18102039 >seq5 Length=20131956 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| ||||||||||| |||| ||||||||| || | || | || || Sbjct 2691989 AGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCC 2691930 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||||||||| |||||||||||||| || || || ||| Sbjct 2691929 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 2691870 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| |||||| | | || || |||| |||||| ||| Sbjct 2691869 TGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTC 2691810 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || ||||| || || || Sbjct 2691809 TTCCCCGTCAGGGTCTTCACGAAGATCTG 2691781 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||||| |||| |||||||||||| | || | ||||| Sbjct 16284446 AGCACTAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCC 16284387 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || ||||||||||| | |||||| || || ||| || || ||| Sbjct 16284386 TCCAGCTGCTTGCCAGCGAAGATGAGTCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 16284327 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||||||| |||| |||||||| | || || || | || || ||| Sbjct 16284326 TGGATCTTTGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCGAGGGTAATAGTC 16284267 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || || |||||||| Sbjct 16284266 TTGCCGGTGAGAGTCTTGACGAAAATTTG 16284238 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||||| || | |||||||| || | || | ||||| Sbjct 16284674 AGCACCAGGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCGGCAAGGGTGCGGCCATCG 16284615 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||||||||| || ||||||||||| ||| || ||||| ||| Sbjct 16284614 TCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 16284555 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| |||||| | | || || |||| || || ||| Sbjct 16284554 TGGATCTTCGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAGAGTAATGGTC 16284495 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || ||||| || || Sbjct 16284494 TTGCCTGTGAGAGTCTTGACAAAGATCTG 16284466 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||||| || | |||||||||||||| ||||| ||||| Sbjct 16283990 AGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTCCTGCCATCC 16283931 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||||||||| |||||||| || || || || ||| Sbjct 16283930 TCGAGCTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCTGGGGGGATCCCCTCCTTGTCC 16283871 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | |||||| | | || || || | || || ||| Sbjct 16283870 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCAACCTCAAGGGTTATGGTC 16283811 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || |||||||| || || Sbjct 16283810 TTGCCAGTGAGTGTCTTCACAAAGATCTG 16283782 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| || || |||||||| |||| |||||||||||| | ||||| || || Sbjct 16284218 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTCCTGCCGTCC 16284159 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| || ||||| ||||| ||||||||||||||||| ||| || || ||| Sbjct 16284158 TCGAGCTGTTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 16284099 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| || || | ||| || | | || || || | ||||| ||| Sbjct 16284098 TGGATCTTTGCCTTAACATTGTCAATGGTATCGGAGGACTCCACCTCAAGGGTGATGGTC 16284039 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || ||||| ||||| Sbjct 16284038 TTTCCAGTCAAGGTCTTGACAAAGATTTG 16284010 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || ||||||||||| |||| | |||||| |||| || | || || Sbjct 14453004 AGCACCAGGTGAAGCGTCGACTCCTTCTGGATGCCGTAGTCGGCCAGGGTGCGGCCGTCC 14453063 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||||||| |||||||||||||| |||||||| || || Sbjct 14453064 TCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGCTCAGG 14453104 >seq1 Length=33916305 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| ||||||||||| |||| ||||||||| || | || | || || Sbjct 9799265 AGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCC 9799324 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||||||||| |||||||||||||| || || || ||| Sbjct 9799325 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCC 9799384 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| |||||| | | || || |||| |||||| ||| Sbjct 9799385 TGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTC 9799444 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || ||||| || || || Sbjct 9799445 TTCCCCGTCAGGGTCTTCACGAAGATCTG 9799473 >seq3 Length=29620734 Score = 122 bits (134), Expect = 2e-22 Identities = 93/110 (85%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || || ||||| |||||||| || |||||||| |||| |||||||||||||| || Sbjct 6260164 CGGAGCCTGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTG 6260223 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| ||||||||||| ||||||||||| || |||||||||||||| Sbjct 6260224 CGACCATCCTCCAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGG 6260273 Score = 122 bits (134), Expect = 2e-22 Identities = 93/110 (85%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || || ||||| |||||||| || |||||||| |||| |||||||||||||| || Sbjct 6271925 CGGAGCCTGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTG 6271984 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| ||||||||||| ||||||||||| || |||||||||||||| Sbjct 6271985 CGACCATCCTCCAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGG 6272034 Score = 120 bits (132), Expect = 7e-22 Identities = 87/101 (86%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| || |||||||| || | |||||||||||||| || | |||||| Sbjct 6260749 AGGACGAGGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCAGCCAGGGTGCGTCCATCC 6260808 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||||||| ||||||||||| || |||||||||||||| Sbjct 6260809 TCCAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGG 6260849 Score = 91.5 bits (100), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 ||||| || |||||| |||| |||| ||||||||| |||| || | ||||| || ||| Sbjct 7390613 AGGTGAAGTGTCGACGCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCATCCTCAAGC 7390554 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||| | || ||||||||||| |||||| ||||||| Sbjct 7390553 TGCCTCCCCGCGAAGATGAGGCGCTGCAGGTCCGG 7390519 >seq9 Length=14105664 Score = 120 bits (132), Expect = 7e-22 Identities = 87/101 (86%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| || |||||||| |||| |||||||||||| | || | ||||| Sbjct 13888706 AGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCC 13888647 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||||||| |||||||||||||| |||||||||||||| Sbjct 13888646 TCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGG 13888606 Score = 96.9 bits (106), Expect = 8e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || || ||||| | ||| ||||| |||||||| || | |||||||||||||| || | | Sbjct 7866242 AGCCTGAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGCCAGTGTGCGT 7866183 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 ||||| |||| |||||| || ||||| || | ||||||||| || ||| Sbjct 7866182 CCATCCTCCAACTGCTTGCCAGCGAATATCAAACGCTGCTGATCTGGA 7866135 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/109 (77%), Gaps = 8/109 (7%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || ||||||||||| |||| ||||||||| || | || | || || Sbjct 10475329 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCC 10475270 Query 199478 TCCAGCT--------GCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||| |||| |||||||||||||||||||||| |||||| Sbjct 10475269 TCCAGCTGCTTCGCTGCTTCCCGGCGAAGATGAGACGCTGCTCGTCCGG 10475221 >seq7 Length=18603524 Score = 104 bits (114), Expect = 6e-17 Identities = 85/102 (83%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAA-GTCCTTCCATC 199476 || || ||||| || ||||||||||| |||| ||||||||| ||| | |||| || || Sbjct 9833279 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCCAGCGTCCGCCCTTC 9833338 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||||||| ||||||||||| || |||||||||||||| Sbjct 9833339 CTCCAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGG 9833380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178883973611897