Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 1e-14 seq9 86.0 2e-11 >seq3 Length=29620734 Score = 96.9 bits (106), Expect = 1e-14 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 451242 CTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATA 451301 || |||||||||||||||| || ||||||| || ||| || | || ||| || Sbjct 28047177 CTGCTGAAGAAATTTCATCCATAGTTCTTATCAAGATGCGTGAGATTGCTGAAGCTTACC 28047236 Query 451302 TTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAAC 451361 | || || | | | ||| || | ||||| || ||||| ||||||||| | || Sbjct 28047237 TAGGATCAACTCTGAAGAATGTTGTTGTCACTGTCCCTGCTTACTTCAATGATTCTCAGA 28047296 Query 451362 GGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATG 451421 |||| |||||||| ||||| || ||||| ||| | |||||| | || || ||||| | Sbjct 28047297 GGCAGGCAACTAAGGATGCTGGTGTTATTGTGGGTCTTAATGTTATGCGTATCATTAACG 28047356 Query 451422 AACCTACAGCAGCTGCTCTAGCATATGGACT 451452 | || ||||| ||||| | || ||||| || Sbjct 28047357 AGCCAACAGCTGCTGCAATTGCTTATGGTCT 28047387 >seq9 Length=14105664 Score = 86.0 bits (94), Expect = 2e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||||| || || ||||| ||||| ||||| || |||| | || | | || Sbjct 10804289 GTTCTCACCAAGATGAAGGAAACTGCAGAGGCTTACCTTGGCAAAACTGTCTCCAAGGCT 10804230 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || || || || || ||||||||||||||||| || || || || || || ||||| || Sbjct 10804229 GTTATCACAGTCCCAGCTTATTTCAATGATGCTCAGCGCCAGGCTACCAAGGATGCTGGT 10804170 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 ||||||||| || | || | | ||||| |||||||| || || || ||||| || Sbjct 10804169 AGAATTGCTGGTCTAGAGGTGATGAGGATTATCAATGAACCCACGGCTGCAGCTCTGTCA 10804110 Query 451445 TATGG 451449 ||||| Sbjct 10804109 TATGG 10804105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975655343095028