Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3 145 6e-29 seq11 134 1e-25 seq12 109 4e-18 seq9 87.8 1e-11 seq5 86.0 5e-11 >seq3 Length=29620734 Score = 145 bits (160), Expect = 6e-29 Identities = 525/814 (64%), Gaps = 13/814 (2%) Strand=Plus/Minus Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | || || || || || | |||||||||||| ||||| ||||||| |||| | Sbjct 28048068 GTCATGACTCCTCCAGCAGTCTCAAGACCAAGAGAAAGTGGAGTCACATCAAGGAGGAGA 28048009 Query 517556 ATATTTTGAAGTTTTTCAT-CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 517614 | || || | || |||| | | || | | ||||| || || | |||| |||| Sbjct 28048008 AGATCCTGCACCTTCTCATTCCCCCTCTCCGCTATGGATAGCAGCCTGGACAGCAACACC 28047949 Query 517615 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT 517674 ||||| | |||||||||||| |||| | | | ||||| || ||| ||| || | Sbjct 28047948 GTATGCCATAGCTTCATCAGG-TTAATGCTCTTACATAGTTCCTTCCCACCGAAGAAGTC 28047890 Query 517675 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 |||||||| ||| | ||||| | || ||| || ||||| | |||| ||||| Sbjct 28047889 CTGCAGAAGTTGCTGAACCCTGGGAATCCTAGTTGAACCACCAACAAGGACAACATCATG 28047830 Query 517735 CACCTGTGATT-TATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCG 517793 | ||| | | |||| |||| |||| | ||| || | || || | | Sbjct 28047829 GATA-GTGCTCCTGTCCATCTTTGCATCCCTCAGGCATTTCTCCATAGGCTCCATGCATT 28047771 Query 517794 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAAT 517853 || || | ||| ||| || || || | ||||| || | ||| || ||| Sbjct 28047770 TCCTGAAGAGGTCCATGTTAAGCTCCTCAAACCTGGCTCTGGTGATGGTGGAATATAAAT 28047711 Query 517854 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCAC 517913 |||| || || || | ||||||| |||||| ||||| || | | || || |||| | Sbjct 28047710 CAATACCCTCAAATAGGGAATCAATTTCAATGGTAGTCTGGGCTGTGGATGAGAGTGTCC 28047651 Query 517914 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAAT 517973 || || | ||||||| ||| || || | | || || | | | | | | || Sbjct 28047650 TCTTTGCCCTCTCACATGATGTTCTGAGATTCCTCAACGCCATGGGGTTTCCACTGATAT 28047591 Query 517974 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAAT 518033 | | |||| ||||||||||| || ||| | | || || | || ||||| | Sbjct 28047590 CCTTCTTATGCTTTCTCTTGAACACTCGGACAAAGTGGTTCACCAGGCAGTTGTCAAAGT 28047531 Query 518034 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 518093 | || || || | | ||| | || | || ||| | || | |||| || || |||| Sbjct 28047530 CCTCTCCACCAAGGTGAGTGTCACCAGTTGTTGCTTTCACCTCAAAAATACCCTCCTCAA 28047471 Query 518094 GAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 518153 | | || | ||||| || |||||| | |||||||| || |||||| | | Sbjct 28047470 TGGTGAGCAGGGAGACATCGAAAGTACCACCA---AGGTCAAAAATGAGCACATTCTTCT 28047414 Query 518154 CTTTGTC-TTGGT-----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 518207 | | ||||| | || ||||||||||| |||| |||||||| ||||| || | Sbjct 28047413 CACCAACATTGGTCACCTTCTTGTCAAGACCATAAGCAATTGCAGCAGCTGTTGGCTCGT 28047354 Query 518208 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 518267 |||| || | || |||||||||||| |||| || ||||| ||||| || || || | Sbjct 28047353 TAATGATACGCATAACATTAAGACCCACAATAACACCAGCATCCTTAGTTGCCTGCCTCT 28047294 Query 518268 GTGAATCGTTAAAATATGCAGGAACAGTAATAAC 518301 | ||||| || || || ||||| ||||| | ||| Sbjct 28047293 GAGAATCATTGAAGTAAGCAGGGACAGTGACAAC 28047260 >seq11 Length=16001410 Score = 134 bits (148), Expect = 1e-25 Identities = 676/1064 (64%), Gaps = 26/1064 (2%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| ||| || || |||||||||||||| | ||||| || || ||||| || Sbjct 15793697 GCAGACACGTTCAGGATACCATTGGCATCAATGTCAAAGCAAACAGTGATCTGAGGAACA 15793638 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || ||| ||||||| ||||| || | | ||| | ||||| || || || Sbjct 15793637 CCCCTCGGAGCAGGAGGGATGCCAGAGAGCTCAAACTTGCCCAGCAGGTTGTTGTCACGT 15793578 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || | | |||||||| ||| ||||| || ||| || || || || || Sbjct 15793577 GTCCTAGTCCTCTCACCCTCATAAACCTGGATGAGGACACCAGGCTGGTTGTCGGAGTAG 15793518 Query 517439 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCT----ATCAATAATAT 517493 || | ||| || ||| || || || || || ||||| || ||||| | Sbjct 15793517 GTGGAAAAGAC-CTGCTCCTTCTTGGTGGGGATGGTGGTGTTCCTCGGGATCAAGAC--- 15793462 Query 517494 TGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 517553 |||||| | |||||| || || || ||||| |||||||| || || ||||| | |||| Sbjct 15793461 -GGTCATGACACCACCAGCAGTCTCCAAACCCAGAGAAAGCGGGGTAACATCCAAGAGGA 15793403 Query 517554 CAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 517613 | | || | || || | | |||| || || || || || | |||||||| Sbjct 15793402 GGAGGTCCTGGACCTTCTCGTTGCCCTCACCACTCAGGATGGCAGCCTGGACAGCAGCAC 15793343 Query 517614 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 517673 ||||||||||||| ||||| || || | | | || | || || ||||| || | Sbjct 15793342 CATATGCAACAGCCTCATCTGGGTTGATGTTCTTGCAAAGCTCCTTGCCGTTGAAGAAGT 15793283 Query 517674 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 517733 ||| || || ||| | || || | || || || ||||| | |||| |||| Sbjct 15793282 CCTGAAGGAGCTGCTGCACCCTTGGGATCCTAGTGGAGCCACCAACAAGAACAACATCAT 15793223 Query 517734 GCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCC 517792 | || ||| | || |||| || | |||| | | || || || || || | || | Sbjct 15793222 GAACA-GTGCTCTTGTCCATCTTAGCATCCCTGAGACACTTCTCCACAGGCTCCATACAC 15793164 Query 517793 GCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA 517852 || || | || || || || ||| | || | || | ||| | | || || Sbjct 15793163 TTCCTGAAGAGATCCATGTTGAGCTCCTCAAATCTGGCACGGGTGATAGT-AGAGTAGAA 15793105 Query 517853 -TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 517911 |||||||| || ||| ||||| | ||||| || || || | | || || || | Sbjct 15793104 GTCAATTCCCTCATACAGGGAATCGATCTCAATGGTGGTCTGGGCAGTGGAGGAGAGGGT 15793045 Query 517912 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTC 517969 | || || | ||||| |||||||| | ||| | | || | | | ||| | | Sbjct 15793044 CCTCTTCGCCCTCTCACAGGCTGTCCTCAATCTCCTGAGAGCCCTGG--GGTTGCCAGTG 15792987 Query 517970 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 518029 | ||| | || | || |||||||| |||| ||| | | || | ||| || ||| Sbjct 15792986 ATATCCTTCTTGTTCTTCCTCTTGAATTCTTGCACAAAGTGGTTGACCATACGGTTGTCA 15792927 Query 518030 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 518089 ||||||||||| || | | ||| | || | || || | || | || | || || Sbjct 15792926 AAATCTTCACCACCAAGGTGAGTGTCACCAGCTGTGGCCTTGACCTCAAAGATACCTTCC 15792867 Query 518090 TCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 518149 |||| | | || | |||||| ||| || || || | ||||| || || |||||| Sbjct 15792866 TCAATTGTAAGGAGGGAGACATCAAAGGTACCGCCTCCAAGGTCAAAGATGAGGACATTC 15792807 Query 518150 ATTTCTT------TGTCTTGGTTT-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 518202 | || || || | || || ||||||||||| |||| ||| ||||| || || Sbjct 15792806 TTCTCACCAACACTG-CTAGCCTTCTTGTCAAGACCATATGCAATAGCTGCAGCGGTGGG 15792748 Query 518203 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 518262 || || || || | || ||||| ||||||||||| ||| ||||| || ||||| || Sbjct 15792747 CTCGTTGATGATACGCATGACATTGAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTG 15792688 Query 518263 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || || || || || || || ||||||||||| | ||| |||| Sbjct 15792687 CCTCTGAGAGTCATTGAAGTAAGCAGGAACAGTGACAACAGCAT 15792644 >seq12 Length=15318893 Score = 109 bits (120), Expect = 4e-18 Identities = 148/205 (72%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGG-- 518164 |||||| ||| |||||||| | ||||| || || |||||| | || | ||| Sbjct 12385841 ACATCAAAGGTACCACCACCAAGGTCAAAGATGAGAACATTCTTCTCACCAACGCTGGAA 12385782 Query 518165 ---TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 518221 || |||||||||||||| |||| ||| |||||||| || || || || || | || Sbjct 12385781 GCCTTCTTATCAAGACCATAGGCAATAGCTGCAGCAGTAGGCTCGTTGATGATACGCATG 12385722 Query 518222 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 518281 ||||| || |||||||| || ||||| || ||||| || || ||||| || || || Sbjct 12385721 ACATTGAGGCCAGCAATGACACCAGCATCCTTGGTGGCCTGCCTCTGTGAGTCATTGAAG 12385662 Query 518282 TATGCAGGAACAGTAATAACGGCAT 518306 || |||||||| || | ||| |||| Sbjct 12385661 TAAGCAGGAACTGTCACAACAGCAT 12385637 Score = 91.5 bits (100), Expect = 1e-12 Identities = 135/190 (71%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 || ||| ||| || || |||| ||||| | ||| | | |||| |||| || | Sbjct 5033574 ACGTCAAAGGTACCGCCTCCCAAGTCAAACACAAGAA---TTGTTTCATTGTTTT---TC 5033521 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || |||| |||||| |||| | ||||||||||| ||||| ||||| | | ||| | Sbjct 5033520 TTCTCAAAACCATAAGCAAGGGATGCAGCAGTTGGCTCATTTATAATGCGGAGAACTTCC 5033461 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 | || || || | ||| |||||||| || ||| ||| ||||| || || || ||||| Sbjct 5033460 AATCCGGCGATGCGTCCAGCATCTTTTGTTGCTGTTCTCTGTGAGTCATTGAAGTATGCC 5033401 Query 518288 GGAACAGTAA 518297 |||||||||| Sbjct 5033400 GGAACAGTAA 5033391 >seq9 Length=14105664 Score = 87.8 bits (96), Expect = 1e-11 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | | ||| ||||| || |||||||| ||||| |||| || | ||||||||| Sbjct 10804105 CCATATGACAGAGCTGCAGCCGTGGGTTCATTGATAATCCTCATCACCTCTAGACCAGCA 10804164 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||||| || ||||| || || || || | || | ||| || ||||| || || || || Sbjct 10804165 ATTCTACCAGCATCCTTGGTAGCCTGGCGCTGAGCATCATTGAAATAAGCTGGGACTGTG 10804224 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTT 518352 ||||| || | | || ||| |||| ||||| ||| |||| ||||| || Sbjct 10804225 ATAACAGCCTTGGAGACAGTTTTGCCAAGGTAAGCCTCTGCAGTTTCCTTCATCTT 10804280 >seq5 Length=20131956 Score = 86.0 bits (94), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 518117 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 518176 || || || |||| ||||||| ||| | | |||| |||| | | || |||| Sbjct 7981484 GTGCCTCCTCCCAGGTCAAAAACAAGAA---TGGTTTCGTTGTTCT---TCTTCTCAAAC 7981537 Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| || || | || ||||| || ||||| || |||| | ||| | | ||||||| Sbjct 7981538 CCATATGCCAATGATGCGGCAGTGGGCTCATTTATGATTCGGAGAACTTCCAAACCAGCA 7981597 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | || |||||||| || ||| ||||| || || |||||||||||||| || || Sbjct 7981598 ATCCGGCCAGCATCTTTTGTTGCTGTCCTTTGCGAGTCATTAAAATATGCAGGGACTGTG 7981657 Query 518297 ATAACGGCATCAGTTACTT 518315 || || || | || |||| Sbjct 7981658 ATCACTGCCTTTGTGACTT 7981676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780698788374646