Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq6 150 2e-31 >seq6 Length=21794218 Score = 150 bits (166), Expect = 2e-31 Identities = 122/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 907226 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTT 907285 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 907286 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 907345 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| |||||| Sbjct 907346 GCTCATCTCCCGCGACGAGGGCCTCCAC 907373 Score = 132 bits (146), Expect = 6e-26 Identities = 118/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| ||| | || || || ||||| ||||| ||||||||||| || ||||| Sbjct 6278969 CTTCGCCGAGCGCCTCGTTGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCGGGCTCCTT 6278910 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | ||||| |||||||| || || ||||| || ||| ||||||||||| Sbjct 6278909 CTGCGCCATCTTCTGGCTAAAGAAGCGCGGCCTAATGCCGGGCCTCACGTTCTCCAACGA 6278850 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| || ||| Sbjct 6278849 GCTCATCTCCCGCGACGAGGGCCTGCAC 6278822 Score = 109 bits (120), Expect = 7e-19 Identities = 250/370 (68%), Gaps = 16/370 (4%) Strand=Plus/Plus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 ||||| || || || | || | ||| ||| ||||||||| | | || || || || Sbjct 19066372 TCAAAACGTCCAGGTCTGAGTAAAGCGGAATCCAGGATATCAGCTCTGTTGGTGGCAGCA 19066431 Query 15948 ATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATA 16007 || |||| || || || | ||||||||||||||||| |||| | ||| || | | Sbjct 19066432 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGTAACTGATTCAAA 19066491 Query 16008 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCA-CTG-----CGTTGCTTTCCC 16061 || || |||| ||||||||| | ||||||| | ||| | |||| |||| Sbjct 19066492 GTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCTGTCCCTCTTTGCCTTCCA 19066545 Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAA 16120 || ||||| || ||||||| || || ||||| || ||| | | | | ||| ||| Sbjct 19066546 ACAGCATCTATTTCATCAACAAATACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA 19066605 Query 16121 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 16180 ||||| || || || ||| || ||||| ||||||||||||||||| | | | | Sbjct 19066606 -AGATCACGAACCCGGGAGGCACCAACACCCACAAACATCTCCACAAACTCAGATCCTG- 19066663 Query 16181 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 16239 | || | || || || ||| || ||| || ||||| || ||| || | |||||||| Sbjct 19066664 ATATCGAGAAAAACGGTACACCAGCTTCTCCTGCAATAGCCTTGGCAAGCAAAGTCTTAC 19066723 Query 16240 CCGTACCTGG 16249 | || || || Sbjct 19066724 CAGTTCCAGG 19066733 Score = 98.7 bits (108), Expect = 1e-15 Identities = 274/413 (66%), Gaps = 18/413 (4%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 ||||| || | || || ||||| |||||| | || || | ||| | || || ||| Sbjct 21503595 CGATCGAACCTCCCAGGCCGAAGAAGCGCGGCGTCCAGCACATCGGGCCTGTTTGTGGCG 21503654 Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 |||| |||| | ||| | | | |||| ||||||||||| |||| |||||||| Sbjct 21503655 GCGAGCACAATGACACCACTGTTGCCGGCAAATCCATCCATCTCCGTCAGGAGCTGGTTG 21503714 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 16062 || || || |||| ||||| || | || | | | || |||| || ||| | || | Sbjct 21503715 ATGGTCTGCTCCCTCTCATCGTTTCC--GCCTCCGAGCCCCGCACCACGCTGCCTCCCGA 21503772 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTTCA 16118 |||| || |||||||| ||||| || ||||| || ||| || || | || Sbjct 21503773 CGGCGTCGATCTCATCGATGAACACAATGCAAGGCGCCTTGGCCTTGGCCTTC----TCG 21503828 Query 16119 AAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 16176 || || |||| ||| || | ||||| ||||| || || | ||| || || | | || Sbjct 21503829 AACAGGTCCC--TCACCCTGGACGCGCCGACACCGACGAAGAGCTCGACGAACTCCGAGG 21503886 Query 16177 CGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 16236 ||| || || |||||| || | || || || | ||| || || || || |||| Sbjct 21503887 CGGCGCAGGAGAAGAAGGGCACGCCGGCCTCCCCGGCGACGGCACGCGCCAGCAGCGTCT 21503946 Query 16237 TACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 16288 | ||||| || ||| || |||||| |||| | | | || |||||||| || Sbjct 21503947 TCCCCGTGCCGGGCGGGCCAACGAGGA-GGCATCCCTTGGGGATCTTGGCCCC 21503998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620723071633520