Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6 125 8e-24 >seq6 Length=21794218 Score = 125 bits (138), Expect = 8e-24 Identities = 313/472 (66%), Gaps = 10/472 (2%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| | || || || || || || | || || | |||| | |||||| ||| Sbjct 21503595 CGATCGAACCTCCCAGGCCGAAGAAGCGCGGCGTCCAGCACATCGGGCCTGTTTGTGGCG 21503654 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCG---AAACCGTCCATTTCTGTGAGAAGCTGG 11619 || || |||||| || ||| || || || ||||| || || || |||||| Sbjct 21503655 GC---GAGCACAATGACACCACTGTTGCCGGCAAATCCATCCATCTCCGTCAGGAGCTGG 21503711 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA--CCTGCCGAACGCTTCTTAC 11677 ||||| ||||| || | ||||||||| | | | | | || || ||||| | | | Sbjct 21503712 TTGATGGTCTGCTCCCTCTCATCGTTTCCG--CCTCCGAGCCCCGCACCACGCTGCCTCC 21503769 Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGA 11737 |||| ||||| |||||||||||||| || || || || ||||| |||| |||| Sbjct 21503770 CGACGGCGTCGATCTCATCGATGAACACAATGCAAGGCGCCTTGGCCTTGGCCTTCTCGA 21503829 Query 11738 AAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAG 11797 | || || | || | ||| || ||||| ||||| | ||| ||||| | | ||| | Sbjct 21503830 ACAGGTCCCTCACCCTGGACGCGCCGACACCGACGAAGAGCTCGACGAACTCCGAGGCGG 21503889 Query 11798 AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTAC 11857 || | |||||| || | ||| || |||| ||| || || || || ||||| | Sbjct 21503890 CGCAGGAGAAGAAGGGCACGCCGGCCTCCCCGGCGACGGCACGCGCCAGCAGCGTCTTCC 21503949 Query 11858 CCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGT 11917 |||| || || | ||| |||| ||| || |||||||||||| || | || Sbjct 21503950 CCGTGCCGGGCGGGCCAACGAGGAGGCATCCCTTGGGGATCTTGGCCCCGAGCGCGGTGT 21504009 Query 11918 AGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 | || || ||||||||||| || || | ||||| || || |||||| Sbjct 21504010 ACTTGTCGGGGTTCTTGAGGAAATCGACGACCTCCTGCAGCTCGAGCTTGGC 21504061 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 907372 TGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCG 907313 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||| ||||| || ||| Sbjct 907312 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCAG 907253 Query 119628 GCGAAAGCGAATAGACGCTCAGC-AAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| |||| || ||||| || || | ||| | ||||| ||| | ||||| Sbjct 907252 GCGAAGGCGACGAGGCGCTCGGCGAAGCGCTCGCCGC-CGTCGATCCAGCGCATGGCCCA 907194 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 || |||||| || | | |||||| || | |||||| Sbjct 907193 GTCGGCCTTGCGGCGCACGGCGGGGACGGTGTCGATGGC 907155 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || ||| || || ||||| || || Sbjct 6278823 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGCCCGGCATTAGGCCG 6278882 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||||||||| |||||||| || || || || |||||||||||||| |||||| Sbjct 6278883 CGCTTCTTTAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACACAG 6278942 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| || | || ||||| || || Sbjct 6278943 GCGAAGGCAACGAGGCGCTCGGCGAA 6278968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588957660759800