Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6 123 3e-23 seq2 82.4 9e-11 >seq6 Length=21794218 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 907373 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCC 907314 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 907313 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCA 907254 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || | ||||||||||||||| Sbjct 907253 GGCGAAGGCGACGAGGCGCTCGGCGAAG 907226 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| || ||||| || || || || ||||| ||||| ||||| || || Sbjct 6278822 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGCCCGGCATTAGGCC 6278881 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| || || ||||||||||| ||||| ||||| Sbjct 6278882 GCGCTTCTTTAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACACA 6278941 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || |||| ||||||||||||||| Sbjct 6278942 GGCGAAGGCAACGAGGCGCTCGGCGAAG 6278969 Score = 111 bits (122), Expect = 2e-19 Identities = 248/369 (67%), Gaps = 14/369 (4%) Strand=Plus/Plus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 ||||| || || || | || | ||| ||| ||||||||| | | || || || || Sbjct 19066372 TCAAAACGTCCAGGTCTGAGTAAAGCGGAATCCAGGATATCAGCTCTGTTGGTGGCAGCA 19066431 Query 9255 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314 || |||| || || || | ||||||||||||||||| |||| | || || | | Sbjct 19066432 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGTAACTGATTCAAA 19066491 Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCAC-TG-----CGTTGCTTTCCC 9368 || || |||| ||||||||| | ||||||| || || | |||| |||| Sbjct 19066492 GTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCTGTCCCTCTTTGCCTTCCA 19066545 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||| || ||||||| || || || || || ||| || ||| | | || Sbjct 19066546 ACAGCATCTATTTCATCAACAAATACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA 19066605 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| ||||||| ||| || ||||| ||||||||||||||||| | | | | | Sbjct 19066606 AGATCACGAACCCGGGAGGCACCAACACCCACAAACATCTCCACAAACTCAGATCCTG-A 19066664 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | || || || ||| || ||| || ||||| || ||| || | ||||||||| Sbjct 19066665 TATCGAGAAAAACGGTACACCAGCTTCTCCTGCAATAGCCTTGGCAAGCAAAGTCTTACC 19066724 Query 9548 CGTACCTGG 9556 || || || Sbjct 19066725 AGTTCCAGG 19066733 Score = 107 bits (118), Expect = 2e-18 Identities = 273/409 (67%), Gaps = 10/409 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 ||||| || | || || ||||| |||||| | || || | ||| | || || ||| Sbjct 21503595 CGATCGAACCTCCCAGGCCGAAGAAGCGCGGCGTCCAGCACATCGGGCCTGTTTGTGGCG 21503654 Query 9252 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9309 |||| |||| | ||| |||| | |||| ||||||||||| |||| || |||| Sbjct 21503655 GCGAGCACAATGACACCACTGTTGCCGG--CAAATCCATCCATCTCCGTCAGGAGCTGGT 21503712 Query 9310 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9367 | || || || |||| ||||| || | || | | | || |||| || ||| | || Sbjct 21503713 TGATGGTCTGCTCCCTCTCATCGTTTCC--GCCTCCGAGCCCCGCACCACGCTGCCTCCC 21503770 Query 9368 CACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 9427 ||||| || |||||||| ||||| ||||| || || || | ||| | || || Sbjct 21503771 GACGGCGTCGATCTCATCGATGAACACAATGCAAGGCGCCTTGGCCTTGGCCTTCTCGAA 21503830 Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487 || || | ||||| ||||| ||||| || || | ||| || || | | ||||| Sbjct 21503831 CAGGTCCCTCACCCTGGACGCGCCGACACCGACGAAGAGCTCGACGAACTCCGAGGCGGC 21503890 Query 9488 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || || |||||| || | || || || | ||| || || || || ||||| || Sbjct 21503891 GCAGGAGAAGAAGGGCACGCCGGCCTCCCCGGCGACGGCACGCGCCAGCAGCGTCTTCCC 21503950 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCC 9595 ||| || ||| || |||||| |||| ||| | || |||||||| || Sbjct 21503951 CGTGCCGGGCGGGCCAACGAGGA-GGCATCCCTTGGGGATCTTGGCCCC 21503998 >seq2 Length=27082872 Score = 82.4 bits (90), Expect = 9e-11 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||| || ||||||||||| |||||||||| || ||| | ||| | || Sbjct 25695668 TGAGGCCTTGGAGTGCCAGCATTGAAAAGGGTTGGTGAAGCATGAGTAAACCAGCGCTGA 25695609 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | | |||||| | | |||| ||||| || ||| ||| || || || | Sbjct 25695608 GACATCATATGGTATGTTTTGATAGCAGATTCAATATCATCCTTGTGTATCCCAATAGAA 25695549 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT- 107345 || | ||| | ||| | ||| ||| |||||| | | ||| | | | || | |||| Sbjct 25695548 ACTCTCATTAGCATATGTTGTGGTCTTTCCACAACCTTTCCA-CCAACTTTTAACAGATA 25695490 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCA 107386 || || |||||||||| || | |||||| ||| || | ||| Sbjct 25695489 AGATC-TCTCAAGGGTCTTAAAACCAAAATAATCATAGTCA 25695450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589962429472840