Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq8 116 5e-21 seq7 100 3e-16 seq3 98.7 1e-15 seq1 84.2 3e-11 seq2 82.4 9e-11 >seq8 Length=18224760 Score = 116 bits (128), Expect = 5e-21 Identities = 121/157 (77%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 180575 CATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAA-GGTC 180633 |||||| |||||||| ||||| ||||| |||||||| | | | | | | ||| |||| Sbjct 4907499 CATGGCTTTCAACCTAAACGGATTCAATTTCAACCAAT---TTGTAGTTAGCCAAAGGTC 4907443 Query 180634 GTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGC 180693 ||| | || |||||||| || | |||||| ||| ||| |||| |||||| |||| Sbjct 4907442 ATGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTACGGAAGTAATGC 4907383 Query 180694 ACGAGCGTAATGCTCACAACTTCCCACTTGACCTGGC 180730 |||| |||||||||||||||||||| || ||||| || Sbjct 4907382 ACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 4907346 Score = 109 bits (120), Expect = 7e-19 Identities = 113/147 (77%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 181838 TTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGT 181897 || || |||||||| || || |||| | ||| ||||| |||||||||||| ||||||| Sbjct 15457066 TTTGTTTCTGTATTCCTAATTAATCCACCGGGGCAATCTGGTTGGTTCTTTGTGCCGAGT 15457007 Query 181898 TTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACG 181957 || || || || || || || | | | | |||||| |||| || ||||| ||||||| | Sbjct 15457006 TTTGGAGT-GCAGCAATATTTTGATCCATCCTCTTCTTCCAAGGATTTCACAATTGGAAG 15456948 Query 181958 CTCAATCCCTTCCATATGATGGGTGTT 181984 | ||||| || ||||||||||| ||| Sbjct 15456947 TTAAATCCATTTCATATGATGGGAGTT 15456921 >seq7 Length=18603524 Score = 100 bits (110), Expect = 3e-16 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 181766 CAATTTGAACTTGCTCG-TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGG 181824 ||| ||||||||||||| ||| || | | | || || ||||| ||| | || || || Sbjct 9543601 CAAATTGAACTTGCTCGGTCTGTTCA-ATTGTGGCCTTATAATGCAATTTCATTCTCTGG 9543659 Query 181825 TCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTT 181884 || || ||||| || || || ||||| || || ||||| ||||| |||||| | ||||| Sbjct 9543660 CCCAATCGCTGTTTTTGTTTCCGTATTCCTGATTTATCCACTGGGGCAATCCGGCTGGTT 9543719 Query 181885 CTTTGCGCCGAGTTTCGGTGTC 181906 ||||||||||||||| || ||| Sbjct 9543720 CTTTGCGCCGAGTTTTGGCGTC 9543741 >seq3 Length=29620734 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 181848 TATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCG 181907 |||| || || ||||| ||||| |||||| | | ||||||| ||| ||||| || | Sbjct 22064862 TATTCCTAATTTATCCACTGGGGCAATCCGGCTTCTTCTTTGTGCCAAGTTTTATGGTAG 22064921 Query 181908 CGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCT 181967 | ||||| || |||||| | ||||| |||| | ||||| |||||||| || || | Sbjct 22064922 CAGCGATATTTCGCTTCATCCTCTTTTTCCAAGAATTTCACAATTGGACATCGAACCCAT 22064981 Query 181968 TCCATATGATGGGTGTTGCTGG 181989 | ||||||||||| |||||||| Sbjct 22064982 TTCATATGATGGGAGTTGCTGG 22065003 >seq1 Length=33916305 Score = 84.2 bits (92), Expect = 3e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 180075 TACATGGGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GT 180133 || |||||||||||||||||||| || || |||||||||| || ||||| ||| || Sbjct 8033868 TATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGT 8033810 Query 180134 AGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCA 180193 ||||||||||||| || || || || || || | ||| | | || ||| | ||||| Sbjct 8033809 TGCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCA 8033750 Query 180194 AGGTTCATTCTCTGACGCAATGCCCCTC 180221 ||| |||||||| | ||| |||| Sbjct 8033749 AGGAAGTTTCTCTGATGGTATGATCCTC 8033722 >seq2 Length=27082872 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||| ||| Sbjct 10948111 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 10948170 Query 141314 CCTACCTGGGGAG 141326 ||||| |||| || Sbjct 10948171 CCTACTTGGGAAG 10948183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610377793769640