Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq8 89.7 6e-13 seq1 84.2 3e-11 >seq8 Length=18224760 Score = 89.7 bits (98), Expect = 6e-13 Identities = 117/160 (73%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 168691 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG-GGTCG 168749 ||||| |||||||| ||||| ||||| |||||||| | | | | | | || |||| Sbjct 4907498 ATGGCTTTCAACCTAAACGGATTCAATTTCAACCAAT---TTGTAGTTAGCCAAAGGTCA 4907442 Query 168750 TGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCA 168809 ||| | || || ||||| ||| | | |||| ||| ||| |||| |||||| ||||| Sbjct 4907441 TGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTACGGAAGTAATGCA 4907382 Query 168810 TGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCT 168849 || ||||| || ||||||||||| || || || ||| || Sbjct 4907381 CGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTACT 4907342 >seq1 Length=33916305 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 168190 TACATGGGACGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGTT 168249 || ||||| ||||| |||||||| | ||| | ||||||||||| ||||| |||| Sbjct 8033868 TATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 8033809 Query 168250 GCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTCAA 168309 ||||| ||||| | || || || || | | | | ||| | | || ||| | |||||| Sbjct 8033808 GCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCAA 8033749 Query 168310 GGTAGTTTCTCTGATG 168325 || ||||||||||||| Sbjct 8033748 GGAAGTTTCTCTGATG 8033733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574455712328280