Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq8 107 2e-18 seq1 107 2e-18 >seq8 Length=18224760 Score = 107 bits (118), Expect = 2e-18 Identities = 121/160 (76%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 164613 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAG-GGTCG 164671 ||||| |||||||| ||||| ||||| |||||||| | | | | | | || |||| Sbjct 4907498 ATGGCTTTCAACCTAAACGGATTCAATTTCAACCAAT---TTGTAGTTAGCCAAAGGTCA 4907442 Query 164672 TGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCA 164731 ||| | || |||||||| || | |||||| ||| ||| |||| |||||| ||||| Sbjct 4907441 TGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTACGGAAGTAATGCA 4907382 Query 164732 CGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGCT 164771 ||| ||||| ||||||||||||||||| || || ||| || Sbjct 4907381 CGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTACT 4907342 >seq1 Length=33916305 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 164112 TACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTT 164171 || ||||||||||||||||||||| || |||||| |||||||||||||||||| |||| Sbjct 8033868 TATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 8033809 Query 164172 GCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 164231 || || ||||| | |||||||| || | | | ||| || | || ||| | |||||| Sbjct 8033808 GCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCAA 8033749 Query 164232 GGTTCGTTCTCTGA 164245 || |||||||| Sbjct 8033748 GGAAGTTTCTCTGA 8033735 Score = 91.5 bits (100), Expect = 2e-13 Identities = 184/266 (69%), Gaps = 8/266 (3%) Strand=Plus/Minus Query 165487 TTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATT 165546 |||| | || ||| | |||| ||| || ||||| ||| |||| | | ||| |||||| | Sbjct 14419131 TTTTTTTGCTCTC-ATGGGGATTTTGCACTAATATGTTGCATGTTACATCAATTTGAACT 14419073 Query 165547 AGCAC-GTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTG 165605 || | |||| || | || || | ||||| ||| |||||| |||||| | | Sbjct 14419072 TGCTCAGTCTGTTCAATTTCAA-CCTTGTAATGCAATTTCGTTCTTTGGTCCAACTATTA 14419014 Query 165606 TTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCAT 165665 ||| |||| ||| || | || | || || || ||| | | |||||| || || ||| Sbjct 14419013 TTTGTGTTTCCGTATTCCCGATTGATCCACTAGGGCAACCCAATTGGTTCTTTGCACCAA 14418954 Query 165666 CTTTCGGGGTCGCA--GCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTG 165723 ||| || || ||| | ||||| | ||| |||||| | ||| |||| |||||||| Sbjct 14418953 ATTTTGGCGTAGCAATGGTATCTTGA--TTCGCCCTCTTCTTCCAAAGATTTCATAACTG 14418896 Query 165724 GACCTT-GAATCCCTTTCATATGATG 165748 ||| || || || |||||||||||| Sbjct 14418895 GACATTATAACCCATTTCATATGATG 14418870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556907458754040