Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq8 104 3e-17 >seq8 Length=18224760 Score = 104 bits (114), Expect = 3e-17 Identities = 125/168 (74%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 169307 GGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGAT 169366 ||||| ||| ||||| |||||| | |||||||| || || ||||||| |||||| | Sbjct 4907510 GGTATTAGTAGCATGGCTTTCAACCTAAACGGATTCAATTTCAACCAAT---TTGTAGTT 4907454 Query 169367 -GTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTAT 169425 | || ||| | | || ||| |||| ||| | | ||| || || ||||||| Sbjct 4907453 AGCCAAAGGTCATGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTAC 4907394 Query 169426 GGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGC 169473 |||||||||||| || ||||| |||||||||||||| |||||| |||| Sbjct 4907393 GGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 4907346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564424024699680