Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq8 102 1e-16 seq1 86.0 7e-12 >seq8 Length=18224760 Score = 102 bits (112), Expect = 1e-16 Identities = 127/172 (74%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 172636 GGTATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGAT 172695 ||||| ||| ||||| |||||||| ||||| ||||| |||||||||| |||||| | Sbjct 4907510 GGTATTAGTAGCATGGCTTTCAACCTAAACGGATTCAATTTCAACCAAT---TTGTAGTT 4907454 Query 172696 -GCTAACGGTAAGATTGTTCCTACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTAT 172754 || || ||| | || | ||| |||| ||| | | ||| || || || |||| Sbjct 4907453 AGCCAAAGGTCATGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTAC 4907394 Query 172755 GGAAGTTATGCATGAAAGAAATGCACACAACTTCCCATTAGACCTTGCTTCT 172806 |||||| ||||| ||| | ||||| ||||||||||| ||||||| ||| || Sbjct 4907393 GGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTACT 4907342 >seq1 Length=33916305 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| |||||||| || || || ||| | || ||||| || || ||||||||||| || || Sbjct 22338408 TGGAGCAGATGTTTGCCACCTTAACCTTCACAAGACCTTTTGCATTCCACATGGTGGAGG 22338467 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||||||| | |||||||||||||| Sbjct 22338468 TGGTCCTGGCATGGGTCCTATTGGTGT 22338494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588032889555760