Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 1e-14 seq1 95.1 1e-14 seq8 93.3 5e-14 >seq3 Length=29620734 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 164047 TTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCA 164106 || || || || || ||||| ||||| | | ||||| | ||| |||| || ||| Sbjct 22064864 TTCCTAATTTATCCACTGGGGCAATCCGGCTTCTTCTTTGTGCCAAGTTTTATGGTAGCA 22064923 Query 164107 GCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTC 164166 || || || | ||| || | || | |||| |||||| || ||||| | |||||| || Sbjct 22064924 GCGATATTTCGCTTCATCCTCTTTTTCCAAGAATTTCACAATTGGACATCGAACCCATTT 22064983 Query 164167 CATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTC 164218 |||||||||||||||||||| || |||| | || ||||| |||||||| Sbjct 22064984 CATATGATGGGAGTTGCTGGAGTATTAGGTGTGGCTCTGCTACATGCTATTC 22065035 >seq1 Length=33916305 Score = 95.1 bits (104), Expect = 1e-14 Identities = 171/244 (70%), Gaps = 7/244 (3%) Strand=Plus/Minus Query 163936 TTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTC-GCCTGATTGGAATCAG 163994 ||||| || || ||| |||| | | |||||||||||||||| | ||| | ||| Sbjct 14419110 TTTGCACTAATATGTTGCATGTTACATCAATTTGAACTTGCTCAGTCTGTTCAATTTCA- 14419052 Query 163995 ACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCAT 164054 ||| | ||||| ||| | |||| |||||| | | | | | ||| || || | || Sbjct 14419051 ACCTTGTAATGCAATTTCGTTCTTTGGTCCAACTATTATTTGTGTTTCCGTATTCCCGAT 14418992 Query 164055 CTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCA--GCAATC 164112 | || || || ||| | | ||||||||| || ||| |||||| || ||| | ||| Sbjct 14418991 TGATCCACTAGGGCAACCCAATTGGTTCTTTGCACCAAATTTTGGCGTAGCAATGGTATC 14418932 Query 164113 TTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGAC-TTTGAACCCCTTCCATAT 164171 || ||||| | | ||| | ||| |||||||||||||||| || ||||| || ||||| Sbjct 14418931 TT--GATTCGCCCTCTTCTTCCAAAGATTTCATAACTGGACATTATAACCCATTTCATAT 14418874 Query 164172 GATG 164175 |||| Sbjct 14418873 GATG 14418870 Score = 93.3 bits (102), Expect = 5e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 162712 TACATGGGACGTGAATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGC-GT 162770 || ||||| ||||| |||||||| || |||||| ||||||||||| ||||| ||| || Sbjct 8033868 TATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGT 8033810 Query 162771 AGCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCA 162830 ||||| ||||| | ||||||||| || | | | ||| || | || ||| | ||||| Sbjct 8033809 TGCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCA 8033750 Query 162831 AGGTTCTTTCTCTGA 162845 ||| ||||||||| Sbjct 8033749 AGGAAGTTTCTCTGA 8033735 >seq8 Length=18224760 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/157 (74%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 163212 CATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG-GGTC 163270 |||||| |||||||| ||||| ||||| |||||||| | | | | | | || |||| Sbjct 4907499 CATGGCTTTCAACCTAAACGGATTCAATTTCAACCAAT---TTGTAGTTAGCCAAAGGTC 4907443 Query 163271 GTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGC 163330 ||| | || || ||||| || | | |||| ||| | | |||| |||||| |||| Sbjct 4907442 ATGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTACGGAAGTAATGC 4907383 Query 163331 ACGAGCGCAATGCTCACAACTTCCCACTTGACCTGGC 163367 |||| || ||||||||||||||||| || ||||| || Sbjct 4907382 ACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 4907346 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/147 (74%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 164035 TTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCT 164094 || ||| ||| || || || | || | ||| ||||| |||||||||| | || | Sbjct 15457066 TTTGTTTCTGTATTCCTAATTAATCCACCGGGGCAATCTGGTTGGTTCTTTGTGCCGAGT 15457007 Query 164095 TTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACT 164154 ||||||||| ||||||| || ||| | || | ||| | ||||||||||| || |||| Sbjct 15457006 TTTGGAGTG-CAGCAATATTTTGATCCATCCTCTTCTTCCAAGGATTTCACAATTGGAAG 15456948 Query 164155 TTGAACCCCTTCCATATGATGGGAGTT 164181 || || || || ||||||||||||||| Sbjct 15456947 TTAAATCCATTTCATATGATGGGAGTT 15456921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557566638228200