Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq8 107 2e-18 seq1 107 2e-18 >seq8 Length=18224760 Score = 107 bits (118), Expect = 2e-18 Identities = 119/158 (75%), Gaps = 12/158 (8%) Strand=Plus/Minus Query 167922 TTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCT-----GGTAAGG 167976 |||||||| ||||| ||||| |||||||| | ||| ||||| ||| | | Sbjct 4907492 TTCAACCTAAACGGATTCAATTTCAACCAAT------TTG-TAGTTAGCCAAAGGTCATG 4907440 Query 167977 TTCTGCCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACG 168036 || | ||||||||| || | |||||| |||| ||| |||| |||||| ||||||| Sbjct 4907439 TTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTACGGAAGTAATGCACG 4907380 Query 168037 AGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCT 168074 | ||||||||||||||||||||||| ||||| ||| || Sbjct 4907379 AACGTAATGCTCACAACTTCCCTCTAGACCTAGCTACT 4907342 >seq1 Length=33916305 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 167415 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 167474 ||||||||||||||||||||||| || |||||| ||||||||||| ||||| |||| Sbjct 8033868 TATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 8033809 Query 167475 GCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 167534 ||||| ||||||| || || || || || || | ||| | | || ||| | |||||| Sbjct 8033808 GCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCAA 8033749 Query 167535 GGTTCTTTCTCTGA 167548 || ||||||||| Sbjct 8033748 GGAAGTTTCTCTGA 8033735 Score = 100 bits (110), Expect = 3e-16 Identities = 186/266 (70%), Gaps = 8/266 (3%) Strand=Plus/Minus Query 168776 TTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACT 168835 |||| | || ||| | |||| ||| || ||||| ||| |||| | | ||| |||||||| Sbjct 14419131 TTTTTTTGCTCTC-ATGGGGATTTTGCACTAATATGTTGCATGTTACATCAATTTGAACT 14419073 Query 168836 GGCAC-GTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTG 168894 || | |||| || | || || | ||||| ||| |||||| |||||| | | Sbjct 14419072 TGCTCAGTCTGTTCAATTTCAA-CCTTGTAATGCAATTTCGTTCTTTGGTCCAACTATTA 14419014 Query 168895 TTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCAT 168954 ||| |||| ||| || | || | || || || ||| | | |||||| || || ||| Sbjct 14419013 TTTGTGTTTCCGTATTCCCGATTGATCCACTAGGGCAACCCAATTGGTTCTTTGCACCAA 14418954 Query 168955 CTTTCGGGGTCTCA--GCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTG 169012 ||| || || || | ||||| ||||| |||||| | ||| |||| |||||||| Sbjct 14418953 ATTTTGGCGTAGCAATGGTATCTT--GATTCGCCCTCTTCTTCCAAAGATTTCATAACTG 14418896 Query 169013 GACACT-GAATCCATTTCATATGATG 169037 |||| | || ||||||||||||||| Sbjct 14418895 GACATTATAACCCATTTCATATGATG 14418870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560590544068400