Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq8 105 1e-17 >seq8 Length=18224760 Score = 105 bits (116), Expect = 1e-17 Identities = 124/166 (75%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 216122 ATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGT-AGACGCATCTGGTAA 216180 ||||| |||||||| ||||| ||||| |||||||| | ||| || || | | ||| | Sbjct 4907498 ATGGCTTTCAACCTAAACGGATTCAATTTCAACCAATTTGTAGTTAGCCAAA---GGTCA 4907442 Query 216181 AGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCA 216240 ||||| ||||||||| || | | ||| || ||||||| |||||||||||| Sbjct 4907441 TGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTACGGAAGTAATGCA 4907382 Query 216241 CGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286 ||| ||||| |||||||||||||| ||||| | ||| || |||| Sbjct 4907381 CGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTACTCTTGAA 4907336 Score = 89.7 bits (98), Expect = 8e-13 Identities = 140/202 (69%), Gaps = 19/202 (9%) Strand=Plus/Minus Query 215397 CATTCATCG------CTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTG 215450 ||||||||| |||| ||||| | ||||| || || || | ||||| ||| || Sbjct 9461008 CATTCATCGTCAAGTCTGCCCCTCCAATAGATATTGATGGTATTCGTGAGCCTGTTTCTA 9460949 Query 215451 GTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTG---TTGTACCTAGTTCAAACG 215507 |||||||| | || || ||||| || ||||||| || || || | |||| ||| | Sbjct 9460948 GTTCTTTACTTTACGGAAACAATATTATCTCTGTTGGTGCCATTATTCCTACTTCTGGGG 9460889 Query 215508 CAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTT----------GACGAA 215557 | |||||||| |||| ||||| || || ||||| ||| | ||| || || Sbjct 9460888 CGATCGGATTGTACTTTTACCCAATTTGAGAAGCTGCATCTGTTTGCATCTGTTGATGAG 9460829 Query 215558 TGGCTCTACAATGGTGGACCTT 215579 ||| | ||||||||||| |||| Sbjct 9460828 TGGTTATACAATGGTGGTCCTT 9460807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745058400021680