Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq8 107 2e-18 seq3 95.1 1e-14 seq7 93.3 5e-14 seq1 91.5 2e-13 >seq8 Length=18224760 Score = 107 bits (118), Expect = 2e-18 Identities = 121/160 (76%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 182622 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG-GGTCG 182680 ||||| |||||||| ||||| ||||| |||||||| | | | | | | || |||| Sbjct 4907498 ATGGCTTTCAACCTAAACGGATTCAATTTCAACCAAT---TTGTAGTTAGCCAAAGGTCA 4907442 Query 182681 TGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCA 182740 ||| | || |||||||| ||| | | |||| |||| |||||||| |||||| ||||| Sbjct 4907441 TGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTACGGAAGTAATGCA 4907382 Query 182741 TGAGCGTAACGCACACAACTTCCCACTAGATCTTGCTGCT 182780 || ||||| || ||||||||||| ||||| || ||| || Sbjct 4907381 CGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTACT 4907342 Score = 105 bits (116), Expect = 8e-18 Identities = 113/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 183594 TTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAG 183653 |||||| ||||||||| || |||||| ||| || ||| |||||||||| || || Sbjct 15457067 TTTTGTTTCTGTATTCCTAATTAATCCACCGGGGCAATCTGGTTGGTTCTTTGTGCCGAG 15457008 Query 183654 TTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGAC 183713 ||| || || |||||||| ||| ||| | | | ||| | || || || ||||| |||| Sbjct 15457007 TTTTGGAGT-GCAGCAATATTTTGATCCATCCTCTTCTTCCAAGGATTTCACAATTGGAA 15456949 Query 183714 GTTAAACCCCTTCCATATGATGGGAGTT 183741 |||||| || || ||||||||||||||| Sbjct 15456948 GTTAAATCCATTTCATATGATGGGAGTT 15456921 >seq3 Length=29620734 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 183605 TATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAG 183664 ||||||| || ||||||||||| || || | ||||||| || ||||| ||||| Sbjct 22064862 TATTCCTAATTTATCCACTGGGGCAATCCGGCTTCTTCTTTGTGCCAAGTTTTATGGTAG 22064921 Query 183665 CAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCT 183724 |||| || ||| | ||| | | || | || | || ||||| ||||| | ||||| | Sbjct 22064922 CAGCGATATTTCGCTTCATCCTCTTTTTCCAAGAATTTCACAATTGGACATCGAACCCAT 22064981 Query 183725 TCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTAT 183776 | |||||||||||||||||||| || |||| | || || || |||||| Sbjct 22064982 TTCATATGATGGGAGTTGCTGGAGTATTAGGTGTGGCTCTGCTACATGCTAT 22065033 >seq7 Length=18603524 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 183527 TTGAACTTGCTCGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTA 183586 ||||||||||||| | || | | ||||| ||||| ||| | |||||||| || | Sbjct 9543605 TTGAACTTGCTCGGTCTGTTCAATTGTGGCCTTATAATGCAATTTCATTCTCTGGCCCAA 9543664 Query 183587 TTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTG 183646 | ||||||||||| |||||||| || ||||||||||| || || |||||||||| Sbjct 9543665 TCGCTGTTTTTGTTTCCGTATTCCTGATTTATCCACTGGGGCAATCCGGCTGGTTCTTTG 9543724 Query 183647 CACCTAGTTTCGGGGT 183662 | || ||||| || || Sbjct 9543725 CGCCGAGTTTTGGCGT 9543740 >seq1 Length=33916305 Score = 91.5 bits (100), Expect = 2e-13 Identities = 168/243 (69%), Gaps = 5/243 (2%) Strand=Plus/Minus Query 183496 TTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGT 183555 ||||| || || ||| |||| | | || ||||||||||||| | || | | Sbjct 14419110 TTTGCACTAATATGTTGCATGTTACATCAATTTGAACTTGCTCAGTCTGTTCAATTTCAA 14419051 Query 183556 CCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATC 183615 |||| ||||| ||| |||||| |||||| | | | ||| ||| ||||||| || Sbjct 14419050 CCTTGTAATGCAATTTCGTTCTTTGGTCCAACTATTATTTGTGTTTCCGTATTCCCGATT 14418991 Query 183616 TATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCA--GCAATCT 183673 ||||||| || || | |||||||||||||| | ||| || |||||| | |||| Sbjct 14418990 GATCCACTAGGGCAACCCAATTGGTTCTTTGCACCAAATTTTGGCGTAGCAATGGTATCT 14418931 Query 183674 TTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTA-AACCCCTTCCATATG 183732 | ||||| | ||| | || | || || |||||||| ||| ||||| || |||||| Sbjct 14418930 T--GATTCGCCCTCTTCTTCCAAAGATTTCATAACTGGACATTATAACCCATTTCATATG 14418873 Query 183733 ATG 183735 ||| Sbjct 14418872 ATG 14418870 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 182121 TACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTA 182180 || ||||| |||||||||||||| || ||| | ||||||||||| ||||| ||| Sbjct 8033868 TATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 8033809 Query 182181 GCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAA 182240 ||||| ||||||| || || || || || || | ||||| | || ||| | |||||| Sbjct 8033808 GCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCAA 8033749 Query 182241 GGTTCGTTCTCCGATGCAATGCCCCTC 182267 || ||||| |||| ||| |||| Sbjct 8033748 GGAAGTTTCTCTGATGGTATGATCCTC 8033722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611676953315800