Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq1 150 2e-31 seq8 120 3e-22 >seq1 Length=33916305 Score = 150 bits (166), Expect = 2e-31 Identities = 155/199 (78%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 165034 TACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCA-TCGGTGTAGCTTGCTA 165092 || || ||||||||||| || | |||| | |||||| ||| | |||||||||| || Sbjct 8033924 TAGAATGGTGGTCCTTATGAGATAATTGT-TCACACTTC-TCACTTAGTGTAGCTTGTTA 8033867 Query 165093 CATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGC 165152 ||||||||||||||||||||| || ||| || |||||||||||||||||| || || Sbjct 8033866 TATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGC 8033807 Query 165153 ATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGG 165212 |||| || | ||| || |||||| | | ||||| || | || ||| | |||||||| Sbjct 8033806 ATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCAAGG 8033747 Query 165213 GAGTTTCTCTGATGGTATG 165231 |||||||||||||||||| Sbjct 8033746 AAGTTTCTCTGATGGTATG 8033728 Score = 84.2 bits (92), Expect = 2e-11 Identities = 182/265 (69%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 166455 TTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATC 166514 ||| |||||||| | || | |||||| ||||| ||| |||| | | || |||||| | Sbjct 14419130 TTTTTTGCTCTC-ATGGGGATTTTGCACTAATATGTTGCATGTTACATCAATTTGAACTT 14419072 Query 166515 GCTC-GTCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGT 166573 |||| |||| | | ||| || | |||||||| | || | |||||| | | | | Sbjct 14419071 GCTCAGTCTGTTCAAT-TTCAACCTTGTAATGCAATTTCGTTCTTTGGTCCAACTATTAT 14419013 Query 166574 CTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATC 166633 | ||| || || | || | || || || ||| | | |||||| || || ||| Sbjct 14419012 TTGTGTTTCCGTATTCCCGATTGATCCACTAGGGCAACCCAATTGGTTCTTTGCACCAAA 14418953 Query 166634 TTTCGGGGTCTCA--GCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGG 166691 ||| || || || | ||||| ||||| ||| ||| | ||| |||| || |||||| Sbjct 14418952 TTTTGGCGTAGCAATGGTATCTT--GATTCGCCCTCTTCTTCCAAAGATTTCATAACTGG 14418895 Query 166692 ACACTG-AACCCATTTCATATGATG 166715 ||| | |||||||||||||||||| Sbjct 14418894 ACATTATAACCCATTTCATATGATG 14418870 >seq8 Length=18224760 Score = 120 bits (132), Expect = 3e-22 Identities = 146/197 (74%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 165559 GGTATCTGGTTCACT----GCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTT 165614 |||| ||||||||| ||| | ||| |||| | |||||| |||||||| ||||| || Sbjct 4907535 GGTACATGGTTCACTATGCGCTTTAGGTATTAGTAGCATGGCTTTCAACCTAAACGGATT 4907476 Query 165615 CAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAA-TCATCCCTACTTGGGCTGACG 165673 ||| |||||||| | |||| | ||| || | | | || |||||||||||| Sbjct 4907475 CAATTTCAACCAAT---TTGTAGTTAGCCAAAGGTCATGTTATAAATACTTGGGCTGATA 4907419 Query 165674 TTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCC 165733 | | |||| |||| ||| |||| |||||| ||||| || ||||| ||||||||||||| Sbjct 4907418 TCATCAACCATGCTAATCTTGGTACGGAAGTAATGCACGAACGTAATGCTCACAACTTCC 4907359 Query 165734 CCCTCGACCTCGCTGCT 165750 | || ||||| ||| || Sbjct 4907358 CTCTAGACCTAGCTACT 4907342 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 19/207 (9%) Strand=Plus/Minus Query 164867 CATTCATCG------CTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAG 164920 ||||||||| |||| || || | || ||||||||||||||||| ||||| | Sbjct 9461008 CATTCATCGTCAAGTCTGCCCCTCCAATAGATATTGATGGTATTCGTGAGCCTGTTTCTA 9460949 Query 164921 GTTCTCTAATGTACGGTAACAACATCATCTC---TGGTGCTGTCGTTCCGTCTTCTAACG 164977 ||||| || | ||||| ||||| || ||||| |||||| | |||| ||||| | Sbjct 9460948 GTTCTTTACTTTACGGAAACAATATTATCTCTGTTGGTGCCATTATTCCTACTTCTGGGG 9460889 Query 164978 CAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAAC------CA----TGGATGAA 165027 | |||||| | |||| || || ||||| ||||||||| | || | ||||| Sbjct 9460888 CGATCGGATTGTACTTTTACCCAATTTGAGAAGCTGCATCTGTTTGCATCTGTTGATGAG 9460829 Query 165028 TGGTTGTACAACGGTGGTCCTTACCAG 165054 ||||| ||||| |||||||||||| || Sbjct 9460828 TGGTTATACAATGGTGGTCCTTACGAG 9460802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563643249011840