Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq8 93.3 5e-14 >seq1 Length=33916305 Score = 107 bits (118), Expect = 2e-18 Identities = 144/199 (72%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 84488 CATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGC 84547 ||| |||||||||||| ||||| || | ||| || | | ||| | || || || || Sbjct 8033728 CATACCATCAGAGAAACTTCCTTGACCAATAGGGTAAATCAAGAAAATAGTAGTAGCAGC 8033787 Query 84548 TGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAG 84607 |||||| ||||||| || |||||| ||||| ||||||||||| ||||| | || Sbjct 8033788 TGCAACAAGAGCAGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAG 8033847 Query 84608 TTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTG 84667 |||||| ||||||||||| ||| | | ||| || |||||| | |||| | | Sbjct 8033848 TTCCCACTCACGACCCATATAACAAGCTACACTAAGTGAGAAGTGTGA-ACAATTATCTC 8033906 Query 84668 ATAAGGTCCACCATTATAT 84686 |||||| |||||||| ||| Sbjct 8033907 ATAAGGACCACCATTCTAT 8033925 >seq8 Length=18224760 Score = 93.3 bits (102), Expect = 5e-14 Identities = 119/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||||||||| |||||| ||||||| ||| | || | Sbjct 4907358 GGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCGTACCAAGATTAGCATGGTTGATG 4907417 Query 84045 ACATCGGCCCAGGTATTGACAACACG-GTTTTGGCTATCGACAAGACTCTGATTGAAGTT 84103 | ||| ||||| ||||| | |||| | |||||||| | |||| || ||||| || Sbjct 4907418 ATATCAGCCCAAGTATTTATAACATGACCTTTGGCTAACTACAA---ATTGGTTGAAATT 4907474 Query 84104 AAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGC 84145 ||||| || || || || |||||| | |||| ||| | ||| Sbjct 4907475 GAATCCGTTTAGGTTGAAAGCCATGCTACTAATACCTAAAGC 4907516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571255811968280