Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_015938.1 Length=89916 Score E Sequences producing significant alignments: (Bits) Value seq214 347 7e-91 seq1993 174 9e-39 seq260 167 1e-36 seq676 107 1e-18 seq1811 104 1e-17 seq2048 95.1 7e-15 seq2242 91.5 8e-14 >seq214 Length=10658 Score = 347 bits (384), Expect = 7e-91 Identities = 610/875 (70%), Gaps = 49/875 (6%) Strand=Plus/Plus Query 3388 TTTCTATGCGCGGCTAACCGTGTGGGTAAATCCTACTCCGAAGCTGTAGAAGTGTACTA- 3446 ||| ||||||| ||||||||||| |||||||| ||||| |||||| || ||| | || Sbjct 7502 TTTTTATGCGCAGCTAACCGTGTAGGTAAATCATACTCAGAAGCT-TATGAGTTTGCTTG 7560 Query 3447 TCACTTGTCTGGTCTGTACCCTGAATGGTGGGAAGGACACAAGTTTAACAAGCCAATTCT 3506 ||| | | || ||||| |||||| || | | ||||||||| |||||||| Sbjct 7561 TCATGTTACAGGCAGATACCCAACGTGGTGGACTGGTAAAAGGTTTAACAAACCAATTCT 7620 Query 3507 TTGTTGGTCTGTCGGTATTACAGGGGATTCGACGCGAAAGGTTCTTCAAAAAGAATTGTT 3566 | ||| |||| || ||||| || ||||| || |||||||| | || |||||||| || Sbjct 7621 TGCGTGGGCTGTAGGGATTACCGGAGATTCAACAAGAAAGGTTTTACAGAAAGAATTATT 7680 Query 3567 CGGTACTCCTATGGGTAAAGACA-CTGATGCCTTGGGCACTGGTGCTATCCCGCGTGACC 3625 ||||||||| || || ||||| || || || || || || |||||||| | || Sbjct 7681 CGGTACTCCAATTGGAAAAGATTTCTCATTA-TTAGGTACGGGCGCTATCCCAAGGGATT 7739 Query 3626 TGATTGATATTGATAACATTGAGAAAGACGGTAACATCATCAAGATTGCTAAGATTAAGC 3685 ||||| | |||| |||||| ||||| ||||| | ||||||| |||| || | Sbjct 7740 GTATTGACTTCGATACCATTGAACGTGACGGCAACATTTTAAAGATTGTGCAGATCAAAC 7799 Query 3686 ATCATGACGCCAATGGTCACTTCGATGGTTGGTCTACTCTCGAATTCCGTTCAACTCAAC 3745 ||||| |||| | || | || ||||| | |||||| | |||||||||||||| |||| Sbjct 7800 ATCATAACGCTAGAGGCGAGTTTGATGGCTACTCTACTTTAGAATTCCGTTCAACACAAC 7859 Query 3746 AGGGTGAACACGTACTGATGGGTGCGACAGTCGATTATATCTGGCTTGACGAAGAAGACC 3805 ||||||||||| |||||||||| ||||| |||||||| ||| | ||||||||||||| Sbjct 7860 AGGGTGAACACACCTTGATGGGTGCTACAGTTGATTATATTTGGATGGACGAAGAAGACC 7919 Query 3806 CATTCAAATCTATGGAAATCTATGCTCAGTGCGTTACTCGTACTGCTACGACTGGTGGTT 3865 ||| ||||||||| |||| ||||||||||||||||||| || ||| || | Sbjct 7920 CATATGAATCTATGGCTATCTTCTCTCAGTGCGTTACTCGTACACTGACAACTAAAGGAT 7979 Query 3866 TGATTACCATCACAGCGACACCTGAGAACGGTTTGACGAAACTGGTAGACCTGTTCATGA 3925 | |||| || ||||| ||||||||||| |||||||| |||| ||||| || |||| Sbjct 7980 TAGTTACTATTACAGCCACACCTGAGAATGGTTTGACTGAACTCGTAGATAAATTTATGA 8039 Query 3926 AAGAT-ATGTCG----------GGCTACT-TATATTTTCAGAACGCTACATGGGATGATG 3973 | | | | | || | | || | ||||| ||||||||| | ||| |||| Sbjct 8040 AGGGTGAAGGCGATGAAGAGACAGGTGCTCTGTATTTCCAGAACGCTTCTTGGTGGGATG 8099 Query 3974 CAC-CG----CA-------------CTTAGATGAGGAAACTAAA-AAAGAATTGCTGGCG 4014 | | || || || || ||||| | |||| ||| | || || Sbjct 8100 CTCACGTTGACATTGGTGGTCACATCTCTGAAGAGGATATTAAACAAATGACAGCAGG-- 8157 Query 4015 TCTATTCCATCTTGGCAACACGAAATGCGAAGCAGGGGTATACCAATGATGGGTGAAGGT 4074 |||||| | |||||| |||||||| | ||||| ||| || |||| ||| Sbjct 8158 --TATTCCTGCATGGCAATTAGAAATGCGTTCTAAAGGTATGCCATTGCTGGGATCTGGT 8215 Query 4075 CTTATTTATGACAT-TC--CTGAATCAATGATTGCTATG-GAACCAATTGAGATTCCACA 4130 | ||||||||| | || ||| || || | ||| ||||| |||| ||||| | Sbjct 8216 TTGATTTATGACGTCTCAGATGATTCTATCA----AATGTGAACCGTTTGAAATTCCTGA 8271 Query 4131 -ACATTGGCGTCGGGTTTGTGCTATTGATATCGGTATTAGTCACGATACTGCTGCTGTTT 4189 ||| ||| || |||||||| ||||||||||||||| |||| || || || || | Sbjct 8272 TACA-TGGAAACGAGTTTGTGCAATTGATATCGGTATTGATCACCCAACGGCAGCGGTGT 8330 Query 4190 GGACAGCTTATGACGCTGCAACAGACACCATCTAT 4224 || |||| ||||| ||| ||| || || || ||| Sbjct 8331 GGTCAGCATATGATGCTAAAACTGATACAATTTAT 8365 Score = 89.7 bits (98), Expect = 3e-13 Identities = 124/174 (71%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 4443 CTTTGTTGAACCAGGCATTATGGAAATTCTTCAAAGGATGAAGACTGGTCGATTCAAAGT 4502 ||| ||||| || || || | || |||| | |||| |||| | | ||| |||| ||| | Sbjct 8367 CTTCGTTGAGCCGGGAATCACCGATATTCGTGAAAGAATGATGTCAGGTAGATTTAAAAT 8426 Query 4503 ATTCAGTACT------TGCGGTCGGTTCTTCGAAGAATTACGTCGTTATCACCGTAAAGA 4556 |||| || | || | | |||| ||||| | |||||||||||||||||| Sbjct 8427 CTTCAATAATGGTGCATGTGCTAAACTCTTTGAAGAGAAAGCTCGTTATCACCGTAAAGA 8486 Query 4557 CGGTAAAATCGTTAAAGACTTCGATGATACGATGGATGCTACCCGATATTCAGC 4610 ||| ||| |||||||| ||||||| ||||||||||| || |||||||| Sbjct 8487 AGGTCGAATTGTTAAAGAACACGATGATTTGATGGATGCTATGCGTTATTCAGC 8540 >seq1993 Length=246 Score = 174 bits (192), Expect = 9e-39 Identities = 143/174 (82%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 78712 GTCGTTACAGTAGCCAATCAGAACTTCTTCTTCCAGCTTGACGTAACGCCAGTGATAGAA 78771 ||| || ||||| |||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 215 GTCTTTGCAGTAACCAACAAGAACTTCTTCTTCCAGCTTGCCGTAACGCCAGTGATAGAA 156 Query 78772 GAAACGGCTTGGACGAGACAGCAGGAATTCACTGACCTGGCCATCGTTGGTAGTCGCCAG 78831 || ||||||||| || || ||||| ||||| || || | || ||||| |||| ||| Sbjct 155 GAGACGGCTTGGGCGCGAGAGCAGAAATTCGCTCACATTTTCACTGTTGGAAGTCAACAG 96 Query 78832 GAACAGCTTGTTGTTAACGCCAGTGCCGTCCAGCAGGGACAGGAGGCCGTTCTG 78885 |||||| ||||||||| | ||||| || |||||||||||||| || || || || Sbjct 95 GAACAGTTTGTTGTTAGCACCAGTACCATCCAGCAGGGACAGCAGACCATTTTG 42 >seq260 Length=5369 Score = 167 bits (184), Expect = 1e-36 Identities = 161/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 9198 GACCCGCTGGGTCAGTTGTTCAAACTGATTCCTAACCGTTGGATGGGCGAGTCTGACATT 9257 ||||| ||||| ||| |||||| | || ||||||||||||| | | ||| Sbjct 5120 GACCCTCTGGGCCAGACCTTCAAAGTAATCGTTAACCGTTGGATGCCTAACGACGCGATT 5061 Query 9258 TACTTCTTCACCCCGTCCGATTGGACCCAGATGGTACTGCGCGCTCCGCAGCGTACTAAA 9317 ||||||||| | | || || ||||| |||||||| ||| | || || ||||||||| || Sbjct 5060 TACTTCTTCTCTGCATCTGACTGGACTCAGATGGTTCTGAGAGCACCACAGCGTACTGAA 5001 Query 9318 CTGGCGAAAGACGGTTCTTACGAGAAGTGGATGGTTGAGATGGAAGTTGGTCTGCGTCAC 9377 ||||||||||| ||||| |||||||| |||||| | |||||||||||||||||| | ||| Sbjct 5000 CTGGCGAAAGATGGTTCATACGAGAAATGGATGATCGAGATGGAAGTTGGTCTGAGACAC 4941 Query 9378 CGCAACCCGTATGCTTCCGGCATCCTG 9404 || ||||| || || || || |||||| Sbjct 4940 CGTAACCCTTACGCATCAGGTATCCTG 4914 Score = 154 bits (170), Expect = 8e-33 Identities = 139/175 (79%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 10247 AACCGTTGGATGCCAGAAAAAGCAATCTACTTCCTCAGCGCATCTGACTGGACTCAAATG 10306 |||||||||||||| | | || || |||||| || ||||||||||||||||| ||| Sbjct 5087 AACCGTTGGATGCCTAACGACGCGATTTACTTCTTCTCTGCATCTGACTGGACTCAGATG 5028 Query 10307 GTTCTCCGTGCTCCAGAAAGAACTAAGCTTGCAAAAGATGGTTCTTATGAGAAATGGATG 10366 ||||| | || ||| | | ||| | || || ||||||||||| || |||||||||||| Sbjct 5027 GTTCTGAGAGCACCACAGCGTACTGAACTGGCGAAAGATGGTTCATACGAGAAATGGATG 4968 Query 10367 CTGGAAATGGAAGTAGGCCTGAGACACCGTCACCCTTATGCCTCTGGTATTCTGT 10421 | || |||||||| || |||||||||||| ||||||| || || ||||| |||| Sbjct 4967 ATCGAGATGGAAGTTGGTCTGAGACACCGTAACCCTTACGCATCAGGTATCCTGT 4913 >seq676 Length=735 Score = 107 bits (118), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 7/198 (4%) Strand=Plus/Plus Query 4419 GGATTGGACTGGTAAGAAGAATAACTTTGTTGAACCAGGCATTATGGAAATTCTTCAAAG 4478 ||| |||| |||||||||||| ||| ||||| || || || | || |||| | |||| Sbjct 96 GGAATGGA-TGGTAAGAAGAACTTCTTCGTTGAGCCGGGAATCACCGATATTCGTGAAAG 154 Query 4479 GATGAAGACTGGTCGATTCAAAGTATTCAGTACT------TGCGGTCGGTTCTTCGAAGA 4532 |||| | | ||| |||| ||| | |||| || | || | | |||| ||||| Sbjct 155 AATGATGTCAGGTAGATTTAAAATCTTCAATAATGGTGCATGTGCTAAACTCTTTGAAGA 214 Query 4533 ATTACGTCGTTATCACCGTAAAGACGGTAAAATCGTTAAAGACTTCGATGATACGATGGA 4592 | |||||||||||||||||| ||| ||| |||||||| ||||||| |||||| Sbjct 215 GAAAGCTCGTTATCACCGTAAAGAAGGTCGAATTGTTAAAGAACACGATGATTTGATGGA 274 Query 4593 TGCTACCCGATATTCAGC 4610 ||||| || |||||||| Sbjct 275 TGCTATGCGTTATTCAGC 292 >seq1811 Length=268 Score = 104 bits (114), Expect = 1e-17 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 48955 GACGATAAACTTCAAACCAACCGTACAGTGAACCAGTCCATACCCACTCGGTAATCATGC 49014 ||||| | | ||| |||||||||||| |||||||||||| |||||||| |||||||| | Sbjct 268 GACGACACATTTCTGACCAACCGTACAATGAACCAGTCCACACCCACTCAGTAATCATTC 209 Query 49015 CTTGTGGCAGTACGAATCTCGCTTGTTCAGGTGTGACACC 49054 | || || || |||||||| |||||||| |||| ||||| Sbjct 208 CCTGAGGAAGAACGAATCTGGCTTGTTCTGGTGCAACACC 169 >seq2048 Length=239 Score = 95.1 bits (104), Expect = 7e-15 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 49355 CTCACGAGCAAGGAACTTAACCAGACGAACATCTCGTTCATTCATCTCACCTTCACGAAC 49414 ||| | ||||||||| |||| ||||| ||||||||||||||| || ||||||||| Sbjct 6 CTCCCTAGCAAGGAAATTAATAAGACGTTCATCTCGTTCATTCAAATCTCCTTCACGAGT 65 Query 49415 TACACCGTATGAAACTCGTGCTGCATTAACAACAGAAGTATCATTACCCATT 49466 ||||| || ||| || |||||||| ||||| || ||||| |||||||| Sbjct 66 AACACCCATTGTAACACGAGCTGCATTCACAACTGATTTATCACTACCCATT 117 >seq2242 Length=218 Score = 91.5 bits (100), Expect = 8e-14 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 53537 TTCAGTGTTGATTTCAGTCGCTGAGAGATGAGAAACCAGAGCGGTGATGTTGTCCAAGAA 53596 |||||| |||||||||| | | | |||||| ||||| || || ||||| || ||||| Sbjct 205 TTCAGTATTGATTTCAGAAGGAGTTAAATGAGAGACCAGTGCTGTAATGTTATC-AAGAA 147 Query 53597 G-ATGAACTTAACACCATGCTCTACCACCCAGAAACGCATACAACGTTTGATATCTTCCC 53655 ||| | ||| || ||| || ||||| ||||| ||||| |||| ||||| ||| Sbjct 146 TTATGTATTTACATTGATTCTCAACAACCCAAAAACGAATACACTGTTTAATATCCGCCC 87 Query 53656 AATCGTTTTGACCGAAGTT 53674 ||||||| ||||||||||| Sbjct 86 AATCGTTCTGACCGAAGTT 68 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 287597668539327