Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 123 3e-23 seq6 100 3e-16 >seq2 Length=27082872 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| || |||| | | ||| |||||||| || Sbjct 25695973 CCACCTTGATCAACATAACGTGCAGTATCATTGAAAACACGCAGCATGGGGACAATCCCG 25695914 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| ||| || || ||| ||||||||||||| |||||| Sbjct 25695913 TTGGATGTTCCATTTGTTCCTCGAATGTAGCTCCCAGTAGCTCTTATATTGTGAATTGAG 25695854 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || ||||| || |||| ||| ||||| | ||||||||||||||| Sbjct 25695853 ACACCAATTCCACCAGCACATTTACTTATGGTGGCACATTCTGAGAGGGTATCATAAATT 25695794 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || |||||||||||| |||| Sbjct 25695793 CCCTCAATACTATCATCTTTCAT 25695771 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| || | ||| || | ||||| || |||||| ||||||| || || | || | Sbjct 25695657 AGTGCCAGCATTGAAAAGGGTTGGTGAAGCATGAGTAAACCAGCGCTGAGACATCATATG 25695598 Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717 ||||||| ||| |||| || ||||| | ||| ||||| || ||||| || | ||||| Sbjct 25695597 GTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGTATCCCAATAGAAACTCTCATTA 25695539 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||||| ||| |||||||| |||| || | | ||| || ||||| ||| | || | Sbjct 25695538 GCATATGTTGTGGTCTTTCCACAACCTTTCCACCAACTTTTAACAGATAAGATCTCTCAA 25695479 Query 48778 ATGTTTTAAAACCAAAATA 48796 || |||||||||||||| Sbjct 25695478 GGGTCTTAAAACCAAAATA 25695460 >seq6 Length=21794218 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | |||||||| || |||| | || ||| || ||||| ||| Sbjct 2575440 CCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTAGCATAGGAACAATCCCA 2575381 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| ||||| ||||| || || ||||||| ||||| || ||| Sbjct 2575380 TTGGAGGTTCCATTTGTTCCTCGGATATAGCTCCCGGTAGCTCTAATATTGTGAACTGAT 2575321 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| ||| | |||||| || | |||||||||||| Sbjct 2575320 ACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAAATT 2575261 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || || |||||| |||| Sbjct 2575260 CCCTCGATGCTGTCATCTTTCAT 2575238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562091297337240