Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-17 seq12 100 2e-15 seq5 100 2e-15 seq6 86.0 5e-11 >seq2 Length=27082872 Score = 107 bits (118), Expect = 2e-17 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || ||||| ||||||||||| | || ||||| || || || |||||| Sbjct 24455404 GCTGTGATTACAGTCCCAGCTTATTTTAATGATGCTCAGCGTCAGGCAACCAAGGATGCT 24455345 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || ||||| |||||| |||||| | || ||||||||||| ||||||||||| || Sbjct 24455344 GGTCGCATTGCCGGACTTGATGTTCAAAGGATCATCAATGAACCAACTGCTGCTGCTCTG 24455285 Query 550520 GCATATGGA 550528 | |||||| Sbjct 24455284 TCTTATGGA 24455276 Score = 89.7 bits (98), Expect = 4e-12 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 |||||||||||| ||||| || ||||| ||| || || ||||| ||||| || || Sbjct 2373527 CCTGAGACGGAGGACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCAAGGGT 2373586 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 || ||| ||||| || || || ||||| ||||| | ||||| || ||||| || || Sbjct 2373587 CCTGCCATCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGAGGGATGCC 2373646 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGA 563431 || || || || || || || || ||||| || |||| || | || |||| Sbjct 2373647 CTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAG-AAGATTCCACCTCGA 2373705 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | || || || || ||||| || ||||| || ||||| Sbjct 2373706 GGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAAGATCTGCAT 2373748 >seq12 Length=15318893 Score = 100 bits (110), Expect = 2e-15 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 || |||| | ||||| | ||||| || ||||| || ||||||||||| | ||| | Sbjct 5033373 AAATTACAAAGGCAGTGGTTACTGTTCCGGCATACTTCAATGACTCACAGAGAACAGCAA 5033432 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | |||||||||||||| || || ||| | | ||||| || ||||| ||||| || |||| Sbjct 5033433 CAAAAGATGCTGGACGCATCGCCGGATTGGAAGTTCTCCGCATTATAAATGAGCCAACTG 5033492 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 |||| | ||||| ||||| |||| || Sbjct 5033493 CTGCATCCCTTGCTTATGGTTTTGAGAA 5033520 Score = 100 bits (110), Expect = 2e-15 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 ||| | |||| || | || || || || || || ||||||||||| | || || || | Sbjct 12385631 TTAAGAATGCTGTTGTGACAGTTCCTGCTTACTTCAATGACTCACAGAGGCAGGCCACCA 12385690 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511 | |||||||| |||||||| || ||||| | ||||| ||||| || |||||||||| Sbjct 12385691 AGGATGCTGGTGTCATTGCTGGCCTCAATGTCATGCGTATCATCAACGAGCCTACTGCTG 12385750 Query 550512 CTGCACTTGCATATGGACTTGATAA 550536 | || |||| ||||| |||||||| Sbjct 12385751 CAGCTATTGCCTATGGTCTTGATAA 12385775 >seq5 Length=20131956 Score = 100 bits (110), Expect = 2e-15 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | ||||| || || || || ||||||||||||||||| ||| | ||| | Sbjct 7981676 AAGTCACAAAGGCAGTGATCACAGTCCCTGCATATTTTAATGACTCGCAAAGGACAGCAA 7981617 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| || |||||||| | | ||||| || || || ||||| || |||| Sbjct 7981616 CAAAAGATGCTGGCCGGATTGCTGGTTTGGAAGTTCTCCGAATCATAAATGAGCCCACTG 7981557 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 | || || | |||||||| |||| || Sbjct 7981556 CCGCATCATTGGCATATGGGTTTGAGAA 7981529 >seq6 Length=21794218 Score = 86.0 bits (94), Expect = 5e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||| ||||||||||||| || | | |||||| ||||| || || |||||||| || || Sbjct 18102133 AATGTTGTAATCAGCTAATGTGCGTCCATCTTCCAGTTGCTTCCCTGCAAAAATCAGCCT 18102074 Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 ||||||||| || ||||| || ||||| || |||| Sbjct 18102073 TTGCTGATCTGGGGGAATACCCTCTTTGTCCTGAA 18102039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029164264685590