Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq8 102 2e-17 seq6 84.2 7e-12 >seq8 Length=18224760 Score = 102 bits (112), Expect = 2e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 ||||| || || ||||||||||||||||| |||||||||||||||||| ||||||| || Sbjct 4907346 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCGTACCAAGATTA 4907405 Query 5255 GCACGGTTCAGGACATCTGCCCAAGT 5280 ||| |||| | || ||| |||||||| Sbjct 4907406 GCATGGTTGATGATATCAGCCCAAGT 4907431 >seq6 Length=21794218 Score = 84.2 bits (92), Expect = 7e-12 Identities = 95/126 (75%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 5365 AGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCT 5424 ||| |||| ||| || | || || | |||| | || |||||| |||||| |||| Sbjct 13078323 AGAAGTAAACCAAATCCCTACTACTGATCAAGCGGTCAAGAAGAAGTGTAAAGAACGGGA 13078264 Query 5425 ATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 5484 ||||||||||||||||||| |||||| | || ||||| || |||||||| || ||||| Sbjct 13078263 GTTGTTAAAGCTAGCATACT-GAAGATTAATCAGCCAAAATAACCATGAGCGGCCACAAT 13078205 Query 5485 GTTATA 5490 |||| Sbjct 13078204 AATATA 13078199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152645084529426