Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 2e-13 seq8 86.0 2e-12 >seq1 Length=33916305 Score = 89.7 bits (98), Expect = 2e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 25968 CATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGC 26027 |||||||||||||||||| ||||| |||| |||||| | ||||| | || | || || Sbjct 8033728 CATACCATCAGAGAAACTTCCTTGACCAATAGGGTAAATCAAGAAAATAGTAGTAGCAGC 8033787 Query 26028 TGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAG 26087 ||||||| | || ||||| || ||| ||||| || | ||| || || | |||| || Sbjct 8033788 TGCAACAAGAGCAGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAG 8033847 Query 26088 TTCCCATTGTCGTCCCA 26104 |||||| | || |||| Sbjct 8033848 TTCCCACTCACGACCCA 8033864 >seq8 Length=18224760 Score = 86.0 bits (94), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 26184 TGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGC 26243 ||||||||| || |||||||| |||| | ||||| || ||| | || | || || Sbjct 9460851 TGCAGCTTCTCAAATTGGGTAAAAGTACAATCCGATCGCCCCAGAAGTAGGAATAATGGC 9460910 Query 26244 CCCT---GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACC 26300 || ||||| || |||||||| || ||||| | | || ||||||||||||||||| Sbjct 9460911 ACCAACAGAGATAATATTGTTTCCGTAAAGTAAAGAACTAGAAACAGGCTCACGAATACC 9460970 Query 26301 ATCTATATCCACGGGAGGCGCAG 26323 ||| ||||| | ||||| |||| Sbjct 9460971 ATCAATATCTATTGGAGGGGCAG 9460993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151989103934316